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6D0Y

X-ray Crystal Structure of PGC-1beta C-terminus bound to the CBP80-CBP20 Cap Binding Complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0000184biological_processnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
A0000339molecular_functionRNA cap binding
A0000340molecular_functionRNA 7-methylguanosine cap binding
A0000380biological_processalternative mRNA splicing, via spliceosome
A0000398biological_processmRNA splicing, via spliceosome
A0002191biological_processcap-dependent translational initiation
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003723molecular_functionRNA binding
A0003729molecular_functionmRNA binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005846cellular_componentnuclear cap binding complex
A0006397biological_processmRNA processing
A0006406biological_processmRNA export from nucleus
A0006408biological_processsnRNA export from nucleus
A0006417biological_processregulation of translation
A0006446biological_processregulation of translational initiation
A0008334biological_processhistone mRNA metabolic process
A0008380biological_processRNA splicing
A0016071biological_processmRNA metabolic process
A0017069molecular_functionsnRNA binding
A0031047biological_processregulatory ncRNA-mediated gene silencing
A0031053biological_processprimary miRNA processing
A0031124biological_processmRNA 3'-end processing
A0031442biological_processpositive regulation of mRNA 3'-end processing
A0032968biological_processpositive regulation of transcription elongation by RNA polymerase II
A0034518cellular_componentRNA cap binding complex
A0035194biological_processregulatory ncRNA-mediated post-transcriptional gene silencing
A0035195biological_processmiRNA-mediated post-transcriptional gene silencing
A0042789biological_processmRNA transcription by RNA polymerase II
A0045292biological_processmRNA cis splicing, via spliceosome
A0046833biological_processpositive regulation of RNA export from nucleus
A0051028biological_processmRNA transport
C0000184biological_processnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
C0000245biological_processspliceosomal complex assembly
C0000339molecular_functionRNA cap binding
C0000340molecular_functionRNA 7-methylguanosine cap binding
C0000380biological_processalternative mRNA splicing, via spliceosome
C0000398biological_processmRNA splicing, via spliceosome
C0002191biological_processcap-dependent translational initiation
C0003723molecular_functionRNA binding
C0003729molecular_functionmRNA binding
C0005515molecular_functionprotein binding
C0005634cellular_componentnucleus
C0005654cellular_componentnucleoplasm
C0005737cellular_componentcytoplasm
C0005739cellular_componentmitochondrion
C0005829cellular_componentcytosol
C0005846cellular_componentnuclear cap binding complex
C0006370biological_process7-methylguanosine mRNA capping
C0006401biological_processRNA catabolic process
C0006406biological_processmRNA export from nucleus
C0006408biological_processsnRNA export from nucleus
C0006417biological_processregulation of translation
C0006446biological_processregulation of translational initiation
C0008334biological_processhistone mRNA metabolic process
C0008380biological_processRNA splicing
C0016070biological_processRNA metabolic process
C0016071biological_processmRNA metabolic process
C0030307biological_processpositive regulation of cell growth
C0031047biological_processregulatory ncRNA-mediated gene silencing
C0031053biological_processprimary miRNA processing
C0031124biological_processmRNA 3'-end processing
C0031442biological_processpositive regulation of mRNA 3'-end processing
C0032968biological_processpositive regulation of transcription elongation by RNA polymerase II
C0034518cellular_componentRNA cap binding complex
C0035194biological_processregulatory ncRNA-mediated post-transcriptional gene silencing
C0035195biological_processmiRNA-mediated post-transcriptional gene silencing
C0042789biological_processmRNA transcription by RNA polymerase II
C0048026biological_processpositive regulation of mRNA splicing, via spliceosome
C0050684biological_processregulation of mRNA processing
C0051028biological_processmRNA transport
C0051607biological_processdefense response to virus
C0060090molecular_functionmolecular adaptor activity
C1905216biological_processpositive regulation of RNA binding
C1990904cellular_componentribonucleoprotein complex
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue MG C 901
ChainResidue
CLYS707
CVAL763
CTHR764

site_idAC2
Number of Residues16
Detailsbinding site for residue GTA A 201
ChainResidue
AASP116
AARG123
ATYR125
AGLY126
AARG127
AGLN133
AVAL134
AARG135
ATYR138
AHOH302
ATYR20
ATYR43
APHE83
AARG112
AASP114
ATRP115

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:12374755, ECO:0000269|PubMed:12434151
ChainResidueDetails
ATYR20
ATYR43

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING:
ChainResidueDetails
AARG112
AARG123
AGLN133

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: N-acetylserine => ECO:0007744|PubMed:22814378
ChainResidueDetails
ASER2

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER13

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:17525332
ChainResidueDetails
ASER18

site_idSWS_FT_FI6
Number of Residues1
DetailsMOD_RES: Omega-N-methylarginine => ECO:0007744|PubMed:24129315
ChainResidueDetails
AARG146

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PDB entries from 2024-07-31

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