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6CCX

NMR data-driven model of GTPase KRas-GMPPNP:Cmpd2 complex tethered to a nanodisc

Functional Information from GO Data
ChainGOidnamespacecontents
A0005576cellular_componentextracellular region
A0006869biological_processlipid transport
A0008289molecular_functionlipid binding
A0042157biological_processlipoprotein metabolic process
B0000139cellular_componentGolgi membrane
B0000165biological_processMAPK cascade
B0001934biological_processpositive regulation of protein phosphorylation
B0003924molecular_functionGTPase activity
B0003925molecular_functionG protein activity
B0005515molecular_functionprotein binding
B0005525molecular_functionGTP binding
B0005737cellular_componentcytoplasm
B0005741cellular_componentmitochondrial outer membrane
B0005789cellular_componentendoplasmic reticulum membrane
B0005829cellular_componentcytosol
B0005886cellular_componentplasma membrane
B0005925cellular_componentfocal adhesion
B0007165biological_processsignal transduction
B0007265biological_processRas protein signal transduction
B0008283biological_processcell population proliferation
B0008542biological_processvisual learning
B0009898cellular_componentcytoplasmic side of plasma membrane
B0010467biological_processgene expression
B0010628biological_processpositive regulation of gene expression
B0012505cellular_componentendomembrane system
B0014009biological_processglial cell proliferation
B0016020cellular_componentmembrane
B0016601biological_processRac protein signal transduction
B0016787molecular_functionhydrolase activity
B0019003molecular_functionGDP binding
B0021897biological_processforebrain astrocyte development
B0030036biological_processactin cytoskeleton organization
B0030857biological_processnegative regulation of epithelial cell differentiation
B0032228biological_processregulation of synaptic transmission, GABAergic
B0035022biological_processpositive regulation of Rac protein signal transduction
B0035914biological_processskeletal muscle cell differentiation
B0043495molecular_functionprotein-membrane adaptor activity
B0043524biological_processnegative regulation of neuron apoptotic process
B0044877molecular_functionprotein-containing complex binding
B0048169biological_processregulation of long-term neuronal synaptic plasticity
B0048873biological_processhomeostasis of number of cells within a tissue
B0051146biological_processstriated muscle cell differentiation
B0051402biological_processneuron apoptotic process
B0060252biological_processpositive regulation of glial cell proliferation
B0060441biological_processepithelial tube branching involved in lung morphogenesis
B0060509biological_processtype I pneumocyte differentiation
C0005576cellular_componentextracellular region
C0006869biological_processlipid transport
C0008289molecular_functionlipid binding
C0042157biological_processlipoprotein metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues9
Detailsbinding site for residue PCW A 401
ChainResidue
BTYR64
BALA66
BPCW201
BPCW202
BPCW212
B17F226
CPCW613
CPCW616
CPCW626

site_idAC2
Number of Residues3
Detailsbinding site for residue PCW A 402
ChainResidue
BPCW209
BPCW213
BPCW214

site_idAC3
Number of Residues7
Detailsbinding site for residue PCW A 403
ChainResidue
APCW407
BASP173
BLYS176
BPCW204
B17F223
B17F229
CPCW620

site_idAC4
Number of Residues3
Detailsbinding site for residue PCW A 404
ChainResidue
APHE214
BPCW217
CPCW610

site_idAC5
Number of Residues2
Detailsbinding site for residue PCW A 405
ChainResidue
BPCW222
CPCW629

site_idAC6
Number of Residues6
Detailsbinding site for residue PCW A 406
ChainResidue
APCW409
BPCW206
BPCW208
BPCW215
BPCW221
B17F226

site_idAC7
Number of Residues5
Detailsbinding site for residue PCW A 407
ChainResidue
APCW403
APCW410
B17F223
B17F225
B17F228

site_idAC8
Number of Residues5
Detailsbinding site for residue PCW A 408
ChainResidue
APCW410
BPCW204
BPCW231
CPCW618
CPCW620

site_idAC9
Number of Residues7
Detailsbinding site for residue PCW A 409
ChainResidue
APCW406
BPCW208
B17F230
CPCW605
CPCW616
CPCW627
CPCW628

site_idAD1
Number of Residues5
Detailsbinding site for residue PCW A 410
ChainResidue
APCW407
APCW408
CPCW606
CPCW620
C17F633

site_idAD2
Number of Residues3
Detailsbinding site for residue 17F A 411
ChainResidue
CPCW617
CPCW624
C17F631

site_idAD3
Number of Residues9
Detailsbinding site for residue PCW B 201
ChainResidue
APCW401
BTHR74
BPCW212
BPCW219
B17F225
B17F226
B17F228
B17F230
CPCW613

site_idAD4
Number of Residues6
Detailsbinding site for residue PCW B 202
ChainResidue
APCW401
BTYR64
BPCW208
BPCW212
B17F226
B17F228

site_idAD5
Number of Residues7
Detailsbinding site for residue PCW B 203
ChainResidue
BSER171
BPCW204
BPCW207
BPCW211
BPCW217
BPCW220
B17F229

site_idAD6
Number of Residues6
Detailsbinding site for residue PCW B 204
ChainResidue
APCW403
APCW408
BMET170
BPCW203
BPCW211
CPCW618

site_idAD7
Number of Residues8
Detailsbinding site for residue PCW B 205
ChainResidue
BMET1
BGLU3
BLEU52
BPCW207
BPCW210
BPCW219
BPCW220
B17F224

site_idAD8
Number of Residues4
Detailsbinding site for residue PCW B 206
ChainResidue
APCW406
BPCW208
B17F226
CPCW601

site_idAD9
Number of Residues10
Detailsbinding site for residue PCW B 207
ChainResidue
BPCW218
BPCW220
BPCW231
BPCW232
B17F234
CPCW621
BPCW203
BPCW205
BPCW211
BPCW217

site_idAE1
Number of Residues10
Detailsbinding site for residue PCW B 208
ChainResidue
APCW406
APCW409
BGLU37
BPCW202
BPCW206
BPCW212
BPCW215
BPCW221
B17F227
CPCW627

site_idAE2
Number of Residues7
Detailsbinding site for residue PCW B 209
ChainResidue
APCW402
BPCW213
BPCW216
B17F227
CPCW611
CPCW617
C17F635

site_idAE3
Number of Residues7
Detailsbinding site for residue PCW B 210
ChainResidue
BGLN43
BLEU52
BPCW205
BPCW216
BPCW221
B17F224
B17F227

site_idAE4
Number of Residues8
Detailsbinding site for residue PCW B 211
ChainResidue
BSER171
BPCW203
BPCW204
BPCW207
BPCW217
B17F229
CPCW619
CPCW621

site_idAE5
Number of Residues12
Detailsbinding site for residue PCW B 212
ChainResidue
APCW401
BTYR64
BALA66
BASP69
BGLN70
BARG73
BPCW201
BPCW202
BPCW208
B17F226
B17F230
CPCW613

site_idAE6
Number of Residues7
Detailsbinding site for residue PCW B 213
ChainResidue
APCW402
BPCW209
BPCW214
B17F227
CPCW611
C17F630
C17F635

site_idAE7
Number of Residues5
Detailsbinding site for residue PCW B 214
ChainResidue
APCW402
BPCW213
BPCW216
CPCW612
C17F634

site_idAE8
Number of Residues7
Detailsbinding site for residue PCW B 215
ChainResidue
APCW406
BPCW208
BPCW221
CPCW601
CPCW608
CPCW609
CPCW628

site_idAE9
Number of Residues4
Detailsbinding site for residue PCW B 216
ChainResidue
BPCW209
BPCW210
BPCW214
B17F224

site_idAF1
Number of Residues8
Detailsbinding site for residue PCW B 217
ChainResidue
APCW404
BPCW203
BPCW207
BPCW211
BPCW218
B17F229
BPCW232
CPCW619

site_idAF2
Number of Residues5
Detailsbinding site for residue PCW B 218
ChainResidue
BPCW207
BPCW217
BPCW222
CPCW603
CPCW625

site_idAF3
Number of Residues13
Detailsbinding site for residue PCW B 219
ChainResidue
BGLU3
BLYS5
BGLU76
BPCW201
BPCW205
BPCW220
B17F223
B17F226
B17F230
BPCW233
CPCW605
CPCW625
C17F631

site_idAF4
Number of Residues7
Detailsbinding site for residue PCW B 220
ChainResidue
BPCW203
BPCW205
BPCW207
BPCW219
BPCW232
BPCW233
B17F234

site_idAF5
Number of Residues14
Detailsbinding site for residue PCW B 221
ChainResidue
APCW406
BGLU3
BLYS5
BARG41
BASP54
BPCW208
BPCW210
BPCW215
B17F224
B17F226
B17F227
B17F230
BEWS237
CPCW608

site_idAF6
Number of Residues3
Detailsbinding site for residue PCW B 222
ChainResidue
APCW405
BPCW218
C17F634

site_idAF7
Number of Residues7
Detailsbinding site for residue 17F B 223
ChainResidue
APCW403
APCW407
BLYS177
BPCW219
B17F225
CPCW606
CPCW626

site_idAF8
Number of Residues7
Detailsbinding site for residue 17F B 224
ChainResidue
BARG41
BPCW205
BPCW210
BPCW216
BPCW221
CPCW611
C17F631

site_idAF9
Number of Residues6
Detailsbinding site for residue 17F B 225
ChainResidue
APCW407
BPCW201
B17F223
CPCW606
CPCW615
CPCW622

site_idAG1
Number of Residues15
Detailsbinding site for residue 17F B 226
ChainResidue
APCW401
APCW406
BALA66
BMET67
BPCW201
BPCW202
BPCW206
BPCW212
BPCW219
BPCW221
B17F230
BEWS237
CPCW626
CPCW627
CPCW628

site_idAG2
Number of Residues8
Detailsbinding site for residue 17F B 227
ChainResidue
BARG41
BPCW208
BPCW209
BPCW210
BPCW213
BPCW221
CPCW602
CPCW617

site_idAG3
Number of Residues6
Detailsbinding site for residue 17F B 228
ChainResidue
APCW407
BASP105
BPCW201
BPCW202
CPCW615
CPCW622

site_idAG4
Number of Residues6
Detailsbinding site for residue 17F B 229
ChainResidue
APCW403
BPCW203
BPCW211
BPCW217
BPCW231
CPCW604

site_idAG5
Number of Residues12
Detailsbinding site for residue 17F B 230
ChainResidue
APCW409
BGLN70
BARG73
BTHR74
BPCW201
BPCW212
BPCW219
BPCW221
B17F226
BEWS237
CPCW605
CPCW613

site_idAG6
Number of Residues8
Detailsbinding site for residue PCW B 231
ChainResidue
APCW408
BPCW207
B17F229
BPCW233
CPCW604
CPCW618
CPCW619
CPCW621

site_idAG7
Number of Residues6
Detailsbinding site for residue PCW B 232
ChainResidue
BPCW207
BPCW217
BPCW220
CPCW604
CPCW619
CPCW625

site_idAG8
Number of Residues6
Detailsbinding site for residue PCW B 233
ChainResidue
BPCW219
BPCW220
BPCW231
CPCW604
CPCW625
CPCW626

site_idAG9
Number of Residues6
Detailsbinding site for residue 17F B 234
ChainResidue
BPCW207
BPCW220
CPCW605
CPCW607
CPCW625
C17F631

site_idAH1
Number of Residues19
Detailsbinding site for residue GNP B 235
ChainResidue
BVAL12
BGLY13
BVAL14
BGLY15
BLYS16
BSER17
BALA18
BPHE28
BVAL29
BASP30
BTYR32
BASP33
BPRO34
BTHR35
BASN116
BLYS117
BASP119
BALA146
BLYS147

site_idAH2
Number of Residues3
Detailsbinding site for residue MG B 236
ChainResidue
BTHR35
BASP38
BASP57

site_idAH3
Number of Residues11
Detailsbinding site for residue EWS B 237
ChainResidue
BLYS5
BLEU6
BVAL7
BASP54
BLEU56
BGLN70
BTYR71
BTHR74
BPCW221
B17F226
B17F230

site_idAH4
Number of Residues5
Detailsbinding site for residue PCW C 601
ChainResidue
BPCW206
BPCW215
CPCW602
CPCW608
C17F630

site_idAH5
Number of Residues4
Detailsbinding site for residue PCW C 602
ChainResidue
B17F227
CPCW601
CPCW609
C17F630

site_idAH6
Number of Residues2
Detailsbinding site for residue PCW C 603
ChainResidue
BPCW218
CPCW625

site_idAH7
Number of Residues4
Detailsbinding site for residue PCW C 604
ChainResidue
B17F229
BPCW231
BPCW232
BPCW233

site_idAH8
Number of Residues5
Detailsbinding site for residue PCW C 605
ChainResidue
APCW409
BPCW219
B17F230
B17F234
CPCW607

site_idAH9
Number of Residues7
Detailsbinding site for residue PCW C 606
ChainResidue
APCW410
B17F223
B17F225
CPCW613
CPCW615
CPCW622
C17F633

site_idAI1
Number of Residues5
Detailsbinding site for residue PCW C 607
ChainResidue
B17F234
CPCW605
CPCW609
CPCW611
C17F631

site_idAI2
Number of Residues6
Detailsbinding site for residue PCW C 608
ChainResidue
BPCW215
BPCW221
CPCW601
CPCW609
CPCW628
C17F630

site_idAI3
Number of Residues7
Detailsbinding site for residue PCW C 609
ChainResidue
BPCW215
CPCW602
CPCW607
CPCW608
CPCW611
C17F630
C17F632

site_idAI4
Number of Residues4
Detailsbinding site for residue PCW C 610
ChainResidue
APCW404
CPCW614
CPCW618
CPCW619

site_idAI5
Number of Residues8
Detailsbinding site for residue PCW C 611
ChainResidue
BPCW209
BPCW213
B17F224
CPCW607
CPCW609
CPCW617
CPCW628
C17F635

site_idAI6
Number of Residues2
Detailsbinding site for residue PCW C 612
ChainResidue
BPCW214
C17F634

site_idAI7
Number of Residues8
Detailsbinding site for residue PCW C 613
ChainResidue
APCW401
BPCW201
BPCW212
B17F230
CPCW606
CPCW622
CPCW626
CPCW627

site_idAI8
Number of Residues2
Detailsbinding site for residue PCW C 614
ChainResidue
CPCW610
CPCW621

site_idAI9
Number of Residues5
Detailsbinding site for residue PCW C 615
ChainResidue
B17F225
B17F228
CPCW606
CPCW622
CPCW626

site_idAJ1
Number of Residues3
Detailsbinding site for residue PCW C 616
ChainResidue
APCW401
APCW409
CPCW622

site_idAJ2
Number of Residues6
Detailsbinding site for residue PCW C 617
ChainResidue
A17F411
BPCW209
B17F227
CPCW611
C17F632
C17F635

site_idAJ3
Number of Residues5
Detailsbinding site for residue PCW C 618
ChainResidue
APCW408
BPCW204
BPCW231
CPCW610
CPCW620

site_idAJ4
Number of Residues7
Detailsbinding site for residue PCW C 619
ChainResidue
BPCW211
BPCW217
BPCW231
BPCW232
CPCW610
CPCW621
CPCW629

site_idAJ5
Number of Residues4
Detailsbinding site for residue PCW C 620
ChainResidue
APCW403
APCW408
APCW410
CPCW618

site_idAJ6
Number of Residues8
Detailsbinding site for residue PCW C 621
ChainResidue
BPCW207
BPCW211
BPCW231
CPCW614
CPCW619
CPCW625
CPCW629
C17F634

site_idAJ7
Number of Residues6
Detailsbinding site for residue PCW C 622
ChainResidue
B17F225
B17F228
CPCW606
CPCW613
CPCW615
CPCW616

site_idAJ8
Number of Residues2
Detailsbinding site for residue PCW C 623
ChainResidue
CLYS488
C17F635

site_idAJ9
Number of Residues2
Detailsbinding site for residue PCW C 624
ChainResidue
A17F411
C17F634

site_idAK1
Number of Residues8
Detailsbinding site for residue PCW C 625
ChainResidue
BPCW218
BPCW219
BPCW232
BPCW233
B17F234
CPCW603
CPCW621
C17F631

site_idAK2
Number of Residues7
Detailsbinding site for residue PCW C 626
ChainResidue
APCW401
B17F223
B17F226
BPCW233
CPCW613
CPCW615
CPCW627

site_idAK3
Number of Residues6
Detailsbinding site for residue PCW C 627
ChainResidue
APCW409
BPCW208
B17F226
CPCW613
CPCW626
CPCW628

site_idAK4
Number of Residues6
Detailsbinding site for residue PCW C 628
ChainResidue
APCW409
BPCW215
B17F226
CPCW608
CPCW611
CPCW627

site_idAK5
Number of Residues3
Detailsbinding site for residue PCW C 629
ChainResidue
APCW405
CPCW619
CPCW621

site_idAK6
Number of Residues6
Detailsbinding site for residue 17F C 630
ChainResidue
BPCW213
CPCW601
CPCW602
CPCW608
CPCW609
C17F632

site_idAK7
Number of Residues6
Detailsbinding site for residue 17F C 631
ChainResidue
A17F411
BPCW219
B17F224
B17F234
CPCW607
CPCW625

site_idAK8
Number of Residues4
Detailsbinding site for residue 17F C 632
ChainResidue
CTYR470
CPCW609
CPCW617
C17F630

site_idAK9
Number of Residues2
Detailsbinding site for residue 17F C 633
ChainResidue
APCW410
CPCW606

site_idAL1
Number of Residues5
Detailsbinding site for residue 17F C 634
ChainResidue
BPCW214
BPCW222
CPCW612
CPCW621
CPCW624

site_idAL2
Number of Residues5
Detailsbinding site for residue 17F C 635
ChainResidue
BPCW209
BPCW213
CPCW611
CPCW617
CPCW623

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:22431598, ECO:0000269|PubMed:22566140
ChainResidueDetails
BGLY10
BVAL29
BALA59
BASN116

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: N-acetylmethionine; in GTPase KRas; alternate => ECO:0000269|Ref.17
ChainResidueDetails
BMET1
CLYS594

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: N-acetylthreonine; in GTPase KRas, N-terminally processed => ECO:0000269|Ref.17
ChainResidueDetails
BTHR2

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:22711838
ChainResidueDetails
BLYS104

site_idSWS_FT_FI5
Number of Residues1
DetailsLIPID: S-palmitoyl cysteine => ECO:0000305|PubMed:29239724
ChainResidueDetails
BLYS180

site_idSWS_FT_FI6
Number of Residues1
DetailsLIPID: N6-palmitoyl lysine => ECO:0000269|PubMed:29239724
ChainResidueDetails
BLYS182

site_idSWS_FT_FI7
Number of Residues2
DetailsLIPID: N6-palmitoyl lysine => ECO:0000305|PubMed:29239724
ChainResidueDetails
BLYS184
BCYS185

site_idSWS_FT_FI8
Number of Residues1
DetailsCARBOHYD: (Microbial infection) O-linked (Glc) threonine; by P.sordellii toxin TcsL => ECO:0000269|PubMed:19744486
ChainResidueDetails
BTHR35

site_idSWS_FT_FI9
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:30442762
ChainResidueDetails
BMET170

221716

PDB entries from 2024-06-26

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