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6BYN

Crystal structure of WDR5-Mb(S4) monobody complex

Functional Information from GO Data
ChainGOidnamespacecontents
W0000122biological_processnegative regulation of transcription by RNA polymerase II
W0000123cellular_componenthistone acetyltransferase complex
W0001501biological_processskeletal system development
W0005515molecular_functionprotein binding
W0005634cellular_componentnucleus
W0005654cellular_componentnucleoplasm
W0006094biological_processgluconeogenesis
W0006325biological_processchromatin organization
W0006355biological_processregulation of DNA-templated transcription
W0006357biological_processregulation of transcription by RNA polymerase II
W0035064molecular_functionmethylated histone binding
W0035097cellular_componenthistone methyltransferase complex
W0042393molecular_functionhistone binding
W0042800molecular_functionhistone H3K4 methyltransferase activity
W0044545cellular_componentNSL complex
W0044665cellular_componentMLL1/2 complex
W0044666cellular_componentMLL3/4 complex
W0045722biological_processpositive regulation of gluconeogenesis
W0045815biological_processtranscription initiation-coupled chromatin remodeling
W0045893biological_processpositive regulation of DNA-templated transcription
W0045995biological_processregulation of embryonic development
W0048188cellular_componentSet1C/COMPASS complex
W0051302biological_processregulation of cell division
W0051726biological_processregulation of cell cycle
W0071339cellular_componentMLL1 complex
W0072686cellular_componentmitotic spindle
W0090043biological_processregulation of tubulin deacetylation
W0140672cellular_componentATAC complex
Functional Information from PROSITE/UniProt
site_idPS00678
Number of Residues15
DetailsWD_REPEATS_1 Trp-Asp (WD) repeats signature. LVSAsdDkTLKIWDV
ChainResidueDetails
WLEU102-VAL116
WILE144-VAL158
WILE186-THR200
WILE274-LEU288

site_idPS00687
Number of Residues8
DetailsALDEHYDE_DEHYDR_GLU Aldehyde dehydrogenases glutamic acid active site. GETGGNSP
ChainResidueDetails
MGLY37-PRO44

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsSITE: Important for interaction with histone H3
ChainResidueDetails
WASP107
WPHE133
WPHE263
WGLU322

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861
ChainResidueDetails
WLYS112

site_idSWS_FT_FI3
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
WLYS46

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PDB entries from 2024-06-12

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