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6BRR

Crystal structure of DNMT3A (R836A)-DNMT3L in complex with DNA containing two CpG sites

Functional Information from GO Data
ChainGOidnamespacecontents
A0008168molecular_functionmethyltransferase activity
D0008168molecular_functionmethyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues17
Detailsbinding site for residue SAH A 1001
ChainResidue
APHE640
AASP686
AVAL687
AGLY707
APRO709
ALEU730
AARG891
ASER892
ATRP893
AASP641
AGLY642
AILE643
ATHR645
ASER663
AGLU664
AVAL665
ACYS666

site_idAC2
Number of Residues17
Detailsbinding site for residue SAH D 1001
ChainResidue
DPHE640
DASP641
DGLY642
DILE643
DTHR645
DSER663
DGLU664
DVAL665
DCYS666
DASP686
DVAL687
DGLY707
DPRO709
DLEU730
DARG891
DSER892
DTRP893

site_idAC3
Number of Residues18
Detailsbinding site for Di-nucleotide DG E 426 and PYO E 427
ChainResidue
DSER708
DCYS710
DSER714
DILE715
DVAL716
DGLU756
DVAL758
DARG790
DARG792
DARG831
DTHR832
DGLY890
DARG891
EDT425
EDG428
FDG442
FDC443
FDA444

site_idAC4
Number of Residues19
Detailsbinding site for Di-nucleotide PYO E 427 and DG E 428
ChainResidue
DSER708
DCYS710
DASN711
DSER714
DVAL716
DASN717
DPRO718
DGLU756
DVAL758
DARG790
DARG792
DTHR834
DTHR835
DGLY890
DARG891
EDG426
EDT429
FDA440
FDC441

site_idAC5
Number of Residues18
Detailsbinding site for Di-nucleotide DG F 426 and PYO F 427
ChainResidue
ASER708
ACYS710
ASER714
AILE715
AVAL716
AGLU756
AVAL758
AALA760
AARG790
AARG792
ATHR832
AGLY890
AARG891
EDG442
EDC443
EDA444
FDT425
FDG428

site_idAC6
Number of Residues20
Detailsbinding site for Di-nucleotide PYO F 427 and DG F 428
ChainResidue
AARG790
AARG792
ATHR835
AGLY890
AARG891
EDA440
EDC441
EDG442
FDG426
FDT429
ASER708
ACYS710
AASN711
ASER714
AVAL716
AASN717
APRO718
AGLU756
AVAL758
AALA760

Functional Information from PROSITE/UniProt
site_idPS00094
Number of Residues13
DetailsC5_MTASE_1 C-5 cytosine-specific DNA methylases active site. DlVigGsPCnDLS
ChainResidueDetails
AASP702-SER714

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues556
DetailsDomain: {"description":"SAM-dependent MTase C5-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU01016","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsActive site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU01016","evidenceCode":"ECO:0000255"},{"source":"PROSITE-ProRule","id":"PRU10018","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues18
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"17713477","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2QRV","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsModified residue: {"description":"S-methylcysteine; by autocatalysis","evidences":[{"source":"UniProtKB","id":"O88508","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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