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6BOX

Structure of the S. pombe Clr4 catalytic domain bound to SAH

Functional Information from GO Data
ChainGOidnamespacecontents
A0005634cellular_componentnucleus
A0008270molecular_functionzinc ion binding
A0042054molecular_functionhistone methyltransferase activity
A0046974molecular_functionhistone H3K9 methyltransferase activity
B0005634cellular_componentnucleus
B0008270molecular_functionzinc ion binding
B0042054molecular_functionhistone methyltransferase activity
B0046974molecular_functionhistone H3K9 methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 501
ChainResidue
ACYS412
ACYS477
ACYS479
ACYS484

site_idAC2
Number of Residues5
Detailsbinding site for residue ZN A 502
ChainResidue
ACYS260
ACYS278
ACYS307
ACYS311
AZN504

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN A 503
ChainResidue
ACYS268
ACYS307
ACYS313
ACYS317

site_idAC4
Number of Residues5
Detailsbinding site for residue ZN A 504
ChainResidue
ACYS260
ACYS262
ACYS268
ACYS276
AZN502

site_idAC5
Number of Residues13
Detailsbinding site for residue SAH A 505
ChainResidue
ALYS338
AGLY339
ATRP340
ATYR381
AARG406
APHE407
AASN409
AHIS410
ATYR451
AGLN476
ACYS477
ALYS478
APHE489

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN B 501
ChainResidue
BCYS412
BCYS477
BCYS479
BCYS484

site_idAC7
Number of Residues4
Detailsbinding site for residue ZN B 502
ChainResidue
BCYS268
BCYS307
BCYS313
BCYS317

site_idAC8
Number of Residues5
Detailsbinding site for residue ZN B 503
ChainResidue
BCYS260
BCYS278
BCYS307
BCYS311
BZN504

site_idAC9
Number of Residues5
Detailsbinding site for residue ZN B 504
ChainResidue
BCYS260
BCYS262
BCYS268
BCYS276
BZN503

site_idAD1
Number of Residues16
Detailsbinding site for residue SAH B 505
ChainResidue
BLYS338
BGLY339
BTRP340
BTHR380
BTYR381
BARG406
BPHE408
BASN409
BHIS410
BTYR451
BARG475
BGLN476
BCYS477
BLYS478
BCYS479
BHOH622

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues18
DetailsBINDING: BINDING => ECO:0000269|PubMed:12389037, ECO:0000269|PubMed:30051891
ChainResidueDetails
ACYS260
BCYS260
BCYS262
BCYS268
BCYS276
BCYS278
BCYS307
BCYS311
BCYS313
BCYS317
ACYS262
ACYS268
ACYS276
ACYS278
ACYS307
ACYS311
ACYS313
ACYS317

site_idSWS_FT_FI2
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:30051891
ChainResidueDetails
ALYS338
BCYS477
BCYS479
BCYS484
APHE407
ACYS412
ACYS477
ACYS479
ACYS484
BLYS338
BPHE407
BCYS412

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00190
ChainResidueDetails
ATYR381
AARG406
BTYR381
BARG406

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N6-methyllysine; by autocatalysis; alternate => ECO:0000269|PubMed:30051891
ChainResidueDetails
ALYS455
BLYS455

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: N6-methyllysine => ECO:0000269|PubMed:30051891
ChainResidueDetails
ALYS464
BLYS464

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PDB entries from 2024-09-11

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