6B5E
Mycobacterium tuberculosis RmlA in complex with dTDP-glucose
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000271 | biological_process | polysaccharide biosynthetic process |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0005829 | cellular_component | cytosol |
| A | 0005886 | cellular_component | plasma membrane |
| A | 0006006 | biological_process | glucose metabolic process |
| A | 0008879 | molecular_function | glucose-1-phosphate thymidylyltransferase activity |
| A | 0009058 | biological_process | biosynthetic process |
| A | 0009274 | cellular_component | peptidoglycan-based cell wall |
| A | 0016740 | molecular_function | transferase activity |
| A | 0016779 | molecular_function | nucleotidyltransferase activity |
| A | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| A | 0019318 | biological_process | hexose metabolic process |
| A | 0046075 | biological_process | dTTP metabolic process |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0000271 | biological_process | polysaccharide biosynthetic process |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0005829 | cellular_component | cytosol |
| B | 0005886 | cellular_component | plasma membrane |
| B | 0006006 | biological_process | glucose metabolic process |
| B | 0008879 | molecular_function | glucose-1-phosphate thymidylyltransferase activity |
| B | 0009058 | biological_process | biosynthetic process |
| B | 0009274 | cellular_component | peptidoglycan-based cell wall |
| B | 0016740 | molecular_function | transferase activity |
| B | 0016779 | molecular_function | nucleotidyltransferase activity |
| B | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| B | 0019318 | biological_process | hexose metabolic process |
| B | 0046075 | biological_process | dTTP metabolic process |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0000271 | biological_process | polysaccharide biosynthetic process |
| C | 0000287 | molecular_function | magnesium ion binding |
| C | 0005829 | cellular_component | cytosol |
| C | 0005886 | cellular_component | plasma membrane |
| C | 0006006 | biological_process | glucose metabolic process |
| C | 0008879 | molecular_function | glucose-1-phosphate thymidylyltransferase activity |
| C | 0009058 | biological_process | biosynthetic process |
| C | 0009274 | cellular_component | peptidoglycan-based cell wall |
| C | 0016740 | molecular_function | transferase activity |
| C | 0016779 | molecular_function | nucleotidyltransferase activity |
| C | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| C | 0019318 | biological_process | hexose metabolic process |
| C | 0046075 | biological_process | dTTP metabolic process |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0000271 | biological_process | polysaccharide biosynthetic process |
| D | 0000287 | molecular_function | magnesium ion binding |
| D | 0005829 | cellular_component | cytosol |
| D | 0005886 | cellular_component | plasma membrane |
| D | 0006006 | biological_process | glucose metabolic process |
| D | 0008879 | molecular_function | glucose-1-phosphate thymidylyltransferase activity |
| D | 0009058 | biological_process | biosynthetic process |
| D | 0009274 | cellular_component | peptidoglycan-based cell wall |
| D | 0016740 | molecular_function | transferase activity |
| D | 0016779 | molecular_function | nucleotidyltransferase activity |
| D | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| D | 0019318 | biological_process | hexose metabolic process |
| D | 0046075 | biological_process | dTTP metabolic process |
| D | 0046872 | molecular_function | metal ion binding |
| E | 0000271 | biological_process | polysaccharide biosynthetic process |
| E | 0000287 | molecular_function | magnesium ion binding |
| E | 0005829 | cellular_component | cytosol |
| E | 0005886 | cellular_component | plasma membrane |
| E | 0006006 | biological_process | glucose metabolic process |
| E | 0008879 | molecular_function | glucose-1-phosphate thymidylyltransferase activity |
| E | 0009058 | biological_process | biosynthetic process |
| E | 0009274 | cellular_component | peptidoglycan-based cell wall |
| E | 0016740 | molecular_function | transferase activity |
| E | 0016779 | molecular_function | nucleotidyltransferase activity |
| E | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| E | 0019318 | biological_process | hexose metabolic process |
| E | 0046075 | biological_process | dTTP metabolic process |
| E | 0046872 | molecular_function | metal ion binding |
| F | 0000271 | biological_process | polysaccharide biosynthetic process |
| F | 0000287 | molecular_function | magnesium ion binding |
| F | 0005829 | cellular_component | cytosol |
| F | 0005886 | cellular_component | plasma membrane |
| F | 0006006 | biological_process | glucose metabolic process |
| F | 0008879 | molecular_function | glucose-1-phosphate thymidylyltransferase activity |
| F | 0009058 | biological_process | biosynthetic process |
| F | 0009274 | cellular_component | peptidoglycan-based cell wall |
| F | 0016740 | molecular_function | transferase activity |
| F | 0016779 | molecular_function | nucleotidyltransferase activity |
| F | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| F | 0019318 | biological_process | hexose metabolic process |
| F | 0046075 | biological_process | dTTP metabolic process |
| F | 0046872 | molecular_function | metal ion binding |
| G | 0000271 | biological_process | polysaccharide biosynthetic process |
| G | 0000287 | molecular_function | magnesium ion binding |
| G | 0005829 | cellular_component | cytosol |
| G | 0005886 | cellular_component | plasma membrane |
| G | 0006006 | biological_process | glucose metabolic process |
| G | 0008879 | molecular_function | glucose-1-phosphate thymidylyltransferase activity |
| G | 0009058 | biological_process | biosynthetic process |
| G | 0009274 | cellular_component | peptidoglycan-based cell wall |
| G | 0016740 | molecular_function | transferase activity |
| G | 0016779 | molecular_function | nucleotidyltransferase activity |
| G | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| G | 0019318 | biological_process | hexose metabolic process |
| G | 0046075 | biological_process | dTTP metabolic process |
| G | 0046872 | molecular_function | metal ion binding |
| H | 0000271 | biological_process | polysaccharide biosynthetic process |
| H | 0000287 | molecular_function | magnesium ion binding |
| H | 0005829 | cellular_component | cytosol |
| H | 0005886 | cellular_component | plasma membrane |
| H | 0006006 | biological_process | glucose metabolic process |
| H | 0008879 | molecular_function | glucose-1-phosphate thymidylyltransferase activity |
| H | 0009058 | biological_process | biosynthetic process |
| H | 0009274 | cellular_component | peptidoglycan-based cell wall |
| H | 0016740 | molecular_function | transferase activity |
| H | 0016779 | molecular_function | nucleotidyltransferase activity |
| H | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| H | 0019318 | biological_process | hexose metabolic process |
| H | 0046075 | biological_process | dTTP metabolic process |
| H | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 35 |
| Details | binding site for residue DAU A 301 |
| Chain | Residue |
| A | LEU6 |
| A | GLY85 |
| A | LEU86 |
| A | LEU106 |
| A | GLY107 |
| A | ASP108 |
| A | ASN109 |
| A | TYR142 |
| A | GLY143 |
| A | GLU158 |
| A | LYS159 |
| A | ALA7 |
| A | VAL169 |
| A | GLU193 |
| A | TRP220 |
| A | ASP222 |
| A | MG302 |
| A | CL304 |
| A | HOH409 |
| A | HOH411 |
| A | HOH417 |
| A | HOH429 |
| A | GLY8 |
| A | HOH467 |
| A | HOH476 |
| A | HOH492 |
| A | HOH521 |
| A | HOH522 |
| A | HOH549 |
| A | GLY9 |
| A | LYS23 |
| A | GLN24 |
| A | GLN80 |
| A | PRO83 |
| A | ASP84 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue MG A 302 |
| Chain | Residue |
| A | ASP108 |
| A | ASP222 |
| A | DAU301 |
| A | HOH417 |
| A | HOH492 |
| site_id | AC3 |
| Number of Residues | 15 |
| Details | binding site for residue TYD A 303 |
| Chain | Residue |
| A | MET43 |
| A | TYR112 |
| A | GLY113 |
| A | GLY115 |
| A | GLY117 |
| A | THR118 |
| A | SER119 |
| A | VAL247 |
| A | SER248 |
| A | GLU252 |
| A | VAL253 |
| A | ARG256 |
| A | HOH460 |
| A | HOH541 |
| A | HOH567 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | binding site for residue CL A 304 |
| Chain | Residue |
| A | GLY11 |
| A | LYS23 |
| A | DAU301 |
| site_id | AC5 |
| Number of Residues | 8 |
| Details | binding site for residue EDO A 305 |
| Chain | Residue |
| A | ALA58 |
| A | HOH427 |
| A | HOH468 |
| A | HOH540 |
| C | GLY66 |
| C | ASP67 |
| C | TYR77 |
| C | HOH486 |
| site_id | AC6 |
| Number of Residues | 31 |
| Details | binding site for residue DAU B 301 |
| Chain | Residue |
| B | LEU6 |
| B | GLY8 |
| B | GLY9 |
| B | LYS23 |
| B | GLN24 |
| B | GLN80 |
| B | PRO83 |
| B | ASP84 |
| B | GLY85 |
| B | LEU86 |
| B | LEU106 |
| B | GLY107 |
| B | ASP108 |
| B | ASN109 |
| B | TYR142 |
| B | GLY143 |
| B | GLU158 |
| B | LYS159 |
| B | VAL169 |
| B | GLU193 |
| B | TRP220 |
| B | ASP222 |
| B | MG302 |
| B | HOH416 |
| B | HOH433 |
| B | HOH451 |
| B | HOH463 |
| B | HOH467 |
| B | HOH520 |
| B | HOH528 |
| B | HOH553 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | binding site for residue MG B 302 |
| Chain | Residue |
| B | DAU301 |
| B | HOH416 |
| B | HOH451 |
| B | ASP108 |
| B | ASP222 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | binding site for residue MG B 303 |
| Chain | Residue |
| B | ARG2 |
| B | HOH478 |
| B | HOH607 |
| E | ASP67 |
| E | HOH451 |
| E | HOH467 |
| site_id | AC9 |
| Number of Residues | 17 |
| Details | binding site for residue TYD B 304 |
| Chain | Residue |
| B | MET43 |
| B | TYR112 |
| B | GLY113 |
| B | PRO114 |
| B | GLY115 |
| B | GLY117 |
| B | THR118 |
| B | SER119 |
| B | VAL247 |
| B | SER248 |
| B | GLU252 |
| B | VAL253 |
| B | ARG256 |
| B | HOH469 |
| B | HOH474 |
| B | HOH532 |
| B | HOH537 |
| site_id | AD1 |
| Number of Residues | 5 |
| Details | binding site for residue NA B 305 |
| Chain | Residue |
| B | ASP100 |
| B | HOH517 |
| B | HOH568 |
| B | HOH582 |
| B | HOH648 |
| site_id | AD2 |
| Number of Residues | 29 |
| Details | binding site for residue DAU C 301 |
| Chain | Residue |
| C | LEU6 |
| C | ALA7 |
| C | GLY8 |
| C | GLY9 |
| C | LYS23 |
| C | GLN24 |
| C | GLN80 |
| C | PRO83 |
| C | ASP84 |
| C | GLY85 |
| C | LEU86 |
| C | LEU106 |
| C | GLY107 |
| C | ASP108 |
| C | ASN109 |
| C | TYR142 |
| C | GLY143 |
| C | GLU158 |
| C | LYS159 |
| C | VAL169 |
| C | TRP220 |
| C | ASP222 |
| C | MG302 |
| C | HOH412 |
| C | HOH417 |
| C | HOH424 |
| C | HOH443 |
| C | HOH454 |
| C | HOH522 |
| site_id | AD3 |
| Number of Residues | 5 |
| Details | binding site for residue MG C 302 |
| Chain | Residue |
| C | ASP108 |
| C | ASP222 |
| C | DAU301 |
| C | HOH417 |
| C | HOH424 |
| site_id | AD4 |
| Number of Residues | 13 |
| Details | binding site for residue TYD C 303 |
| Chain | Residue |
| C | MET43 |
| C | TYR112 |
| C | GLY113 |
| C | PRO114 |
| C | GLY115 |
| C | GLY117 |
| C | THR118 |
| C | SER119 |
| C | VAL247 |
| C | SER248 |
| C | GLU252 |
| C | ARG256 |
| C | HOH444 |
| site_id | AD5 |
| Number of Residues | 6 |
| Details | binding site for residue NA C 304 |
| Chain | Residue |
| C | SER10 |
| C | THR18 |
| C | ILE21 |
| C | HOH437 |
| C | HOH438 |
| C | HOH541 |
| site_id | AD6 |
| Number of Residues | 30 |
| Details | binding site for residue DAU D 301 |
| Chain | Residue |
| D | LEU6 |
| D | ALA7 |
| D | GLY8 |
| D | GLY9 |
| D | LYS23 |
| D | GLN24 |
| D | GLN80 |
| D | PRO83 |
| D | ASP84 |
| D | GLY85 |
| D | LEU86 |
| D | LEU106 |
| D | GLY107 |
| D | ASP108 |
| D | ASN109 |
| D | TYR142 |
| D | GLY143 |
| D | GLU158 |
| D | LYS159 |
| D | VAL169 |
| D | TRP220 |
| D | ASP222 |
| D | MG302 |
| D | HOH417 |
| D | HOH422 |
| D | HOH446 |
| D | HOH455 |
| D | HOH467 |
| D | HOH468 |
| D | HOH488 |
| site_id | AD7 |
| Number of Residues | 5 |
| Details | binding site for residue MG D 302 |
| Chain | Residue |
| D | ASP108 |
| D | ASP222 |
| D | DAU301 |
| D | HOH417 |
| D | HOH422 |
| site_id | AD8 |
| Number of Residues | 14 |
| Details | binding site for residue TYD D 303 |
| Chain | Residue |
| D | MET43 |
| D | TYR112 |
| D | GLY113 |
| D | PRO114 |
| D | GLY115 |
| D | GLY117 |
| D | THR118 |
| D | SER119 |
| D | VAL247 |
| D | SER248 |
| D | GLU252 |
| D | VAL253 |
| D | ARG256 |
| D | HOH480 |
| site_id | AD9 |
| Number of Residues | 34 |
| Details | binding site for residue DAU E 301 |
| Chain | Residue |
| E | LEU6 |
| E | ALA7 |
| E | GLY8 |
| E | GLY9 |
| E | LYS23 |
| E | GLN24 |
| E | GLN80 |
| E | PRO83 |
| E | ASP84 |
| E | GLY85 |
| E | LEU86 |
| E | LEU106 |
| E | GLY107 |
| E | ASP108 |
| E | ASN109 |
| E | TYR142 |
| E | GLY143 |
| E | GLU158 |
| E | LYS159 |
| E | VAL169 |
| E | GLU193 |
| E | THR197 |
| E | TRP220 |
| E | ASP222 |
| E | MG303 |
| E | HOH417 |
| E | HOH434 |
| E | HOH439 |
| E | HOH448 |
| E | HOH459 |
| E | HOH491 |
| E | HOH493 |
| E | HOH521 |
| E | HOH526 |
| site_id | AE1 |
| Number of Residues | 21 |
| Details | binding site for residue DAU E 302 |
| Chain | Residue |
| C | ASP178 |
| C | ARG208 |
| C | HOH414 |
| E | MET43 |
| E | TYR112 |
| E | GLY113 |
| E | GLY115 |
| E | LEU116 |
| E | GLY117 |
| E | THR118 |
| E | SER119 |
| E | VAL247 |
| E | SER248 |
| E | GLU252 |
| E | VAL253 |
| E | ARG256 |
| E | HOH405 |
| E | HOH431 |
| E | HOH460 |
| E | HOH501 |
| E | HOH542 |
| site_id | AE2 |
| Number of Residues | 5 |
| Details | binding site for residue MG E 303 |
| Chain | Residue |
| E | ASP108 |
| E | ASP222 |
| E | DAU301 |
| E | HOH417 |
| E | HOH434 |
| site_id | AE3 |
| Number of Residues | 28 |
| Details | binding site for residue DAU F 301 |
| Chain | Residue |
| F | LEU6 |
| F | GLY8 |
| F | GLY9 |
| F | LYS23 |
| F | GLN24 |
| F | GLN80 |
| F | PRO83 |
| F | ASP84 |
| F | GLY85 |
| F | LEU86 |
| F | LEU106 |
| F | GLY107 |
| F | ASP108 |
| F | ASN109 |
| F | TYR142 |
| F | GLY143 |
| F | GLU158 |
| F | LYS159 |
| F | VAL169 |
| F | TRP220 |
| F | ASP222 |
| F | MG303 |
| F | HOH415 |
| F | HOH428 |
| F | HOH434 |
| F | HOH436 |
| F | HOH483 |
| F | HOH504 |
| site_id | AE4 |
| Number of Residues | 21 |
| Details | binding site for residue DAU F 302 |
| Chain | Residue |
| F | MET43 |
| F | TYR112 |
| F | GLY113 |
| F | PRO114 |
| F | GLY115 |
| F | GLY117 |
| F | THR118 |
| F | SER119 |
| F | VAL247 |
| F | SER248 |
| F | GLU252 |
| F | VAL253 |
| F | ARG256 |
| F | HOH449 |
| F | HOH462 |
| F | HOH476 |
| F | HOH484 |
| F | HOH494 |
| F | HOH505 |
| F | HOH530 |
| H | HOH419 |
| site_id | AE5 |
| Number of Residues | 5 |
| Details | binding site for residue MG F 303 |
| Chain | Residue |
| F | ASP108 |
| F | ASP222 |
| F | DAU301 |
| F | HOH428 |
| F | HOH434 |
| site_id | AE6 |
| Number of Residues | 32 |
| Details | binding site for residue DAU G 301 |
| Chain | Residue |
| G | LEU6 |
| G | GLY8 |
| G | GLY9 |
| G | LYS23 |
| G | GLN24 |
| G | GLN80 |
| G | PRO83 |
| G | ASP84 |
| G | GLY85 |
| G | LEU86 |
| G | LEU106 |
| G | GLY107 |
| G | ASP108 |
| G | ASN109 |
| G | TYR142 |
| G | GLY143 |
| G | GLU158 |
| G | LYS159 |
| G | VAL169 |
| G | GLU193 |
| G | THR197 |
| G | TRP220 |
| G | ASP222 |
| G | MG302 |
| G | HOH415 |
| G | HOH422 |
| G | HOH436 |
| G | HOH441 |
| G | HOH475 |
| G | HOH485 |
| G | HOH499 |
| G | HOH522 |
| site_id | AE7 |
| Number of Residues | 5 |
| Details | binding site for residue MG G 302 |
| Chain | Residue |
| G | ASP108 |
| G | ASP222 |
| G | DAU301 |
| G | HOH415 |
| G | HOH436 |
| site_id | AE8 |
| Number of Residues | 17 |
| Details | binding site for residue TYD G 303 |
| Chain | Residue |
| G | MET43 |
| G | TYR112 |
| G | GLY113 |
| G | PRO114 |
| G | GLY115 |
| G | LEU116 |
| G | GLY117 |
| G | THR118 |
| G | SER119 |
| G | VAL247 |
| G | SER248 |
| G | GLU252 |
| G | VAL253 |
| G | ARG256 |
| G | HOH453 |
| G | HOH479 |
| G | HOH491 |
| site_id | AE9 |
| Number of Residues | 28 |
| Details | binding site for residue DAU H 301 |
| Chain | Residue |
| H | LEU6 |
| H | ALA7 |
| H | GLY8 |
| H | GLY9 |
| H | LYS23 |
| H | GLN24 |
| H | GLN80 |
| H | PRO83 |
| H | ASP84 |
| H | GLY85 |
| H | LEU86 |
| H | LEU106 |
| H | GLY107 |
| H | ASP108 |
| H | ASN109 |
| H | TYR142 |
| H | GLY143 |
| H | GLU158 |
| H | LYS159 |
| H | VAL169 |
| H | GLU193 |
| H | TRP220 |
| H | ASP222 |
| H | MG302 |
| H | HOH405 |
| H | HOH417 |
| H | HOH418 |
| H | HOH473 |
| site_id | AF1 |
| Number of Residues | 5 |
| Details | binding site for residue MG H 302 |
| Chain | Residue |
| H | ASP108 |
| H | ASP222 |
| H | DAU301 |
| H | HOH405 |
| H | HOH417 |
| site_id | AF2 |
| Number of Residues | 12 |
| Details | binding site for residue TYD H 303 |
| Chain | Residue |
| H | MET43 |
| H | TYR112 |
| H | GLY113 |
| H | GLY115 |
| H | GLY117 |
| H | THR118 |
| H | SER119 |
| H | VAL247 |
| H | SER248 |
| H | GLU252 |
| H | HOH434 |
| H | HOH465 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 64 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"29076563","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6B5K","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 16 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"29076563","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6B5E","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6B5K","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 40 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"29076563","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6B5E","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 24 |
| Details | Modified residue: {"description":"Phosphothreonine; by PknB","evidences":[{"source":"PubMed","id":"33868202","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
