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6B5E

Mycobacterium tuberculosis RmlA in complex with dTDP-glucose

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0005886cellular_componentplasma membrane
A0006006biological_processglucose metabolic process
A0008879molecular_functionglucose-1-phosphate thymidylyltransferase activity
A0009058biological_processbiosynthetic process
A0009274cellular_componentpeptidoglycan-based cell wall
A0016779molecular_functionnucleotidyltransferase activity
A0019305biological_processdTDP-rhamnose biosynthetic process
A0045226biological_processextracellular polysaccharide biosynthetic process
A0046075biological_processdTTP metabolic process
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0005886cellular_componentplasma membrane
B0006006biological_processglucose metabolic process
B0008879molecular_functionglucose-1-phosphate thymidylyltransferase activity
B0009058biological_processbiosynthetic process
B0009274cellular_componentpeptidoglycan-based cell wall
B0016779molecular_functionnucleotidyltransferase activity
B0019305biological_processdTDP-rhamnose biosynthetic process
B0045226biological_processextracellular polysaccharide biosynthetic process
B0046075biological_processdTTP metabolic process
B0046872molecular_functionmetal ion binding
C0000287molecular_functionmagnesium ion binding
C0005886cellular_componentplasma membrane
C0006006biological_processglucose metabolic process
C0008879molecular_functionglucose-1-phosphate thymidylyltransferase activity
C0009058biological_processbiosynthetic process
C0009274cellular_componentpeptidoglycan-based cell wall
C0016779molecular_functionnucleotidyltransferase activity
C0019305biological_processdTDP-rhamnose biosynthetic process
C0045226biological_processextracellular polysaccharide biosynthetic process
C0046075biological_processdTTP metabolic process
C0046872molecular_functionmetal ion binding
D0000287molecular_functionmagnesium ion binding
D0005886cellular_componentplasma membrane
D0006006biological_processglucose metabolic process
D0008879molecular_functionglucose-1-phosphate thymidylyltransferase activity
D0009058biological_processbiosynthetic process
D0009274cellular_componentpeptidoglycan-based cell wall
D0016779molecular_functionnucleotidyltransferase activity
D0019305biological_processdTDP-rhamnose biosynthetic process
D0045226biological_processextracellular polysaccharide biosynthetic process
D0046075biological_processdTTP metabolic process
D0046872molecular_functionmetal ion binding
E0000287molecular_functionmagnesium ion binding
E0005886cellular_componentplasma membrane
E0006006biological_processglucose metabolic process
E0008879molecular_functionglucose-1-phosphate thymidylyltransferase activity
E0009058biological_processbiosynthetic process
E0009274cellular_componentpeptidoglycan-based cell wall
E0016779molecular_functionnucleotidyltransferase activity
E0019305biological_processdTDP-rhamnose biosynthetic process
E0045226biological_processextracellular polysaccharide biosynthetic process
E0046075biological_processdTTP metabolic process
E0046872molecular_functionmetal ion binding
F0000287molecular_functionmagnesium ion binding
F0005886cellular_componentplasma membrane
F0006006biological_processglucose metabolic process
F0008879molecular_functionglucose-1-phosphate thymidylyltransferase activity
F0009058biological_processbiosynthetic process
F0009274cellular_componentpeptidoglycan-based cell wall
F0016779molecular_functionnucleotidyltransferase activity
F0019305biological_processdTDP-rhamnose biosynthetic process
F0045226biological_processextracellular polysaccharide biosynthetic process
F0046075biological_processdTTP metabolic process
F0046872molecular_functionmetal ion binding
G0000287molecular_functionmagnesium ion binding
G0005886cellular_componentplasma membrane
G0006006biological_processglucose metabolic process
G0008879molecular_functionglucose-1-phosphate thymidylyltransferase activity
G0009058biological_processbiosynthetic process
G0009274cellular_componentpeptidoglycan-based cell wall
G0016779molecular_functionnucleotidyltransferase activity
G0019305biological_processdTDP-rhamnose biosynthetic process
G0045226biological_processextracellular polysaccharide biosynthetic process
G0046075biological_processdTTP metabolic process
G0046872molecular_functionmetal ion binding
H0000287molecular_functionmagnesium ion binding
H0005886cellular_componentplasma membrane
H0006006biological_processglucose metabolic process
H0008879molecular_functionglucose-1-phosphate thymidylyltransferase activity
H0009058biological_processbiosynthetic process
H0009274cellular_componentpeptidoglycan-based cell wall
H0016779molecular_functionnucleotidyltransferase activity
H0019305biological_processdTDP-rhamnose biosynthetic process
H0045226biological_processextracellular polysaccharide biosynthetic process
H0046075biological_processdTTP metabolic process
H0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues35
Detailsbinding site for residue DAU A 301
ChainResidue
ALEU6
AGLY85
ALEU86
ALEU106
AGLY107
AASP108
AASN109
ATYR142
AGLY143
AGLU158
ALYS159
AALA7
AVAL169
AGLU193
ATRP220
AASP222
AMG302
ACL304
AHOH409
AHOH411
AHOH417
AHOH429
AGLY8
AHOH467
AHOH476
AHOH492
AHOH521
AHOH522
AHOH549
AGLY9
ALYS23
AGLN24
AGLN80
APRO83
AASP84

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 302
ChainResidue
AASP108
AASP222
ADAU301
AHOH417
AHOH492

site_idAC3
Number of Residues15
Detailsbinding site for residue TYD A 303
ChainResidue
AMET43
ATYR112
AGLY113
AGLY115
AGLY117
ATHR118
ASER119
AVAL247
ASER248
AGLU252
AVAL253
AARG256
AHOH460
AHOH541
AHOH567

site_idAC4
Number of Residues3
Detailsbinding site for residue CL A 304
ChainResidue
AGLY11
ALYS23
ADAU301

site_idAC5
Number of Residues8
Detailsbinding site for residue EDO A 305
ChainResidue
AALA58
AHOH427
AHOH468
AHOH540
CGLY66
CASP67
CTYR77
CHOH486

site_idAC6
Number of Residues31
Detailsbinding site for residue DAU B 301
ChainResidue
BLEU6
BGLY8
BGLY9
BLYS23
BGLN24
BGLN80
BPRO83
BASP84
BGLY85
BLEU86
BLEU106
BGLY107
BASP108
BASN109
BTYR142
BGLY143
BGLU158
BLYS159
BVAL169
BGLU193
BTRP220
BASP222
BMG302
BHOH416
BHOH433
BHOH451
BHOH463
BHOH467
BHOH520
BHOH528
BHOH553

site_idAC7
Number of Residues5
Detailsbinding site for residue MG B 302
ChainResidue
BDAU301
BHOH416
BHOH451
BASP108
BASP222

site_idAC8
Number of Residues6
Detailsbinding site for residue MG B 303
ChainResidue
BARG2
BHOH478
BHOH607
EASP67
EHOH451
EHOH467

site_idAC9
Number of Residues17
Detailsbinding site for residue TYD B 304
ChainResidue
BMET43
BTYR112
BGLY113
BPRO114
BGLY115
BGLY117
BTHR118
BSER119
BVAL247
BSER248
BGLU252
BVAL253
BARG256
BHOH469
BHOH474
BHOH532
BHOH537

site_idAD1
Number of Residues5
Detailsbinding site for residue NA B 305
ChainResidue
BASP100
BHOH517
BHOH568
BHOH582
BHOH648

site_idAD2
Number of Residues29
Detailsbinding site for residue DAU C 301
ChainResidue
CLEU6
CALA7
CGLY8
CGLY9
CLYS23
CGLN24
CGLN80
CPRO83
CASP84
CGLY85
CLEU86
CLEU106
CGLY107
CASP108
CASN109
CTYR142
CGLY143
CGLU158
CLYS159
CVAL169
CTRP220
CASP222
CMG302
CHOH412
CHOH417
CHOH424
CHOH443
CHOH454
CHOH522

site_idAD3
Number of Residues5
Detailsbinding site for residue MG C 302
ChainResidue
CASP108
CASP222
CDAU301
CHOH417
CHOH424

site_idAD4
Number of Residues13
Detailsbinding site for residue TYD C 303
ChainResidue
CMET43
CTYR112
CGLY113
CPRO114
CGLY115
CGLY117
CTHR118
CSER119
CVAL247
CSER248
CGLU252
CARG256
CHOH444

site_idAD5
Number of Residues6
Detailsbinding site for residue NA C 304
ChainResidue
CSER10
CTHR18
CILE21
CHOH437
CHOH438
CHOH541

site_idAD6
Number of Residues30
Detailsbinding site for residue DAU D 301
ChainResidue
DLEU6
DALA7
DGLY8
DGLY9
DLYS23
DGLN24
DGLN80
DPRO83
DASP84
DGLY85
DLEU86
DLEU106
DGLY107
DASP108
DASN109
DTYR142
DGLY143
DGLU158
DLYS159
DVAL169
DTRP220
DASP222
DMG302
DHOH417
DHOH422
DHOH446
DHOH455
DHOH467
DHOH468
DHOH488

site_idAD7
Number of Residues5
Detailsbinding site for residue MG D 302
ChainResidue
DASP108
DASP222
DDAU301
DHOH417
DHOH422

site_idAD8
Number of Residues14
Detailsbinding site for residue TYD D 303
ChainResidue
DMET43
DTYR112
DGLY113
DPRO114
DGLY115
DGLY117
DTHR118
DSER119
DVAL247
DSER248
DGLU252
DVAL253
DARG256
DHOH480

site_idAD9
Number of Residues34
Detailsbinding site for residue DAU E 301
ChainResidue
ELEU6
EALA7
EGLY8
EGLY9
ELYS23
EGLN24
EGLN80
EPRO83
EASP84
EGLY85
ELEU86
ELEU106
EGLY107
EASP108
EASN109
ETYR142
EGLY143
EGLU158
ELYS159
EVAL169
EGLU193
ETHR197
ETRP220
EASP222
EMG303
EHOH417
EHOH434
EHOH439
EHOH448
EHOH459
EHOH491
EHOH493
EHOH521
EHOH526

site_idAE1
Number of Residues21
Detailsbinding site for residue DAU E 302
ChainResidue
CASP178
CARG208
CHOH414
EMET43
ETYR112
EGLY113
EGLY115
ELEU116
EGLY117
ETHR118
ESER119
EVAL247
ESER248
EGLU252
EVAL253
EARG256
EHOH405
EHOH431
EHOH460
EHOH501
EHOH542

site_idAE2
Number of Residues5
Detailsbinding site for residue MG E 303
ChainResidue
EASP108
EASP222
EDAU301
EHOH417
EHOH434

site_idAE3
Number of Residues28
Detailsbinding site for residue DAU F 301
ChainResidue
FLEU6
FGLY8
FGLY9
FLYS23
FGLN24
FGLN80
FPRO83
FASP84
FGLY85
FLEU86
FLEU106
FGLY107
FASP108
FASN109
FTYR142
FGLY143
FGLU158
FLYS159
FVAL169
FTRP220
FASP222
FMG303
FHOH415
FHOH428
FHOH434
FHOH436
FHOH483
FHOH504

site_idAE4
Number of Residues21
Detailsbinding site for residue DAU F 302
ChainResidue
FMET43
FTYR112
FGLY113
FPRO114
FGLY115
FGLY117
FTHR118
FSER119
FVAL247
FSER248
FGLU252
FVAL253
FARG256
FHOH449
FHOH462
FHOH476
FHOH484
FHOH494
FHOH505
FHOH530
HHOH419

site_idAE5
Number of Residues5
Detailsbinding site for residue MG F 303
ChainResidue
FASP108
FASP222
FDAU301
FHOH428
FHOH434

site_idAE6
Number of Residues32
Detailsbinding site for residue DAU G 301
ChainResidue
GLEU6
GGLY8
GGLY9
GLYS23
GGLN24
GGLN80
GPRO83
GASP84
GGLY85
GLEU86
GLEU106
GGLY107
GASP108
GASN109
GTYR142
GGLY143
GGLU158
GLYS159
GVAL169
GGLU193
GTHR197
GTRP220
GASP222
GMG302
GHOH415
GHOH422
GHOH436
GHOH441
GHOH475
GHOH485
GHOH499
GHOH522

site_idAE7
Number of Residues5
Detailsbinding site for residue MG G 302
ChainResidue
GASP108
GASP222
GDAU301
GHOH415
GHOH436

site_idAE8
Number of Residues17
Detailsbinding site for residue TYD G 303
ChainResidue
GMET43
GTYR112
GGLY113
GPRO114
GGLY115
GLEU116
GGLY117
GTHR118
GSER119
GVAL247
GSER248
GGLU252
GVAL253
GARG256
GHOH453
GHOH479
GHOH491

site_idAE9
Number of Residues28
Detailsbinding site for residue DAU H 301
ChainResidue
HLEU6
HALA7
HGLY8
HGLY9
HLYS23
HGLN24
HGLN80
HPRO83
HASP84
HGLY85
HLEU86
HLEU106
HGLY107
HASP108
HASN109
HTYR142
HGLY143
HGLU158
HLYS159
HVAL169
HGLU193
HTRP220
HASP222
HMG302
HHOH405
HHOH417
HHOH418
HHOH473

site_idAF1
Number of Residues5
Detailsbinding site for residue MG H 302
ChainResidue
HASP108
HASP222
HDAU301
HHOH405
HHOH417

site_idAF2
Number of Residues12
Detailsbinding site for residue TYD H 303
ChainResidue
HMET43
HTYR112
HGLY113
HGLY115
HGLY117
HTHR118
HSER119
HVAL247
HSER248
HGLU252
HHOH434
HHOH465

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues64
DetailsBINDING: BINDING => ECO:0000269|PubMed:29076563, ECO:0007744|PDB:6B5K
ChainResidueDetails
CGLY8
CGLY11
CTHR12
CARG13
CLYS23
CGLN24
CGLN80
CGLY85
DGLY8
DGLY11
DTHR12
DARG13
DLYS23
DGLN24
DGLN80
DGLY85
EGLY8
EGLY11
ETHR12
EARG13
ELYS23
EGLN24
EGLN80
EGLY85
FGLY8
FGLY11
FTHR12
FARG13
FLYS23
FGLN24
FGLN80
FGLY85
GGLY8
GGLY11
GTHR12
GARG13
GLYS23
GGLN24
GGLN80
GGLY85
HGLY8
HGLY11
HTHR12
HARG13
HLYS23
HGLN24
HGLN80
HGLY85
AGLY8
AGLY11
ATHR12
AARG13
ALYS23
AGLN24
AGLN80
AGLY85
BGLY8
BGLY11
BTHR12
BARG13
BLYS23
BGLN24
BGLN80
BGLY85

site_idSWS_FT_FI2
Number of Residues16
DetailsBINDING: BINDING => ECO:0000269|PubMed:29076563, ECO:0007744|PDB:6B5E, ECO:0007744|PDB:6B5K
ChainResidueDetails
AASP108
AASP222
BASP108
BASP222
CASP108
CASP222
DASP108
DASP222
EASP108
EASP222
FASP108
FASP222
GASP108
GASP222
HASP108
HASP222

site_idSWS_FT_FI3
Number of Residues40
DetailsBINDING: BINDING => ECO:0000269|PubMed:29076563, ECO:0007744|PDB:6B5E
ChainResidueDetails
AASN109
AGLY143
AGLU158
ALYS159
AVAL169
BASN109
BGLY143
BGLU158
BLYS159
BVAL169
CASN109
CGLY143
CGLU158
CLYS159
CVAL169
DASN109
DGLY143
DGLU158
DLYS159
DVAL169
EASN109
EGLY143
EGLU158
ELYS159
EVAL169
FASN109
FGLY143
FGLU158
FLYS159
FVAL169
GASN109
GGLY143
GGLU158
GLYS159
GVAL169
HASN109
HGLY143
HGLU158
HLYS159
HVAL169

site_idSWS_FT_FI4
Number of Residues24
DetailsMOD_RES: Phosphothreonine; by PknB => ECO:0000269|PubMed:33868202
ChainResidueDetails
ATHR12
ATHR54
ATHR197
BTHR12
BTHR54
BTHR197
CTHR12
CTHR54
CTHR197
DTHR12
DTHR54
DTHR197
ETHR12
ETHR54
ETHR197
FTHR12
FTHR54
FTHR197
GTHR12
GTHR54
GTHR197
HTHR12
HTHR54
HTHR197

219869

PDB entries from 2024-05-15

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