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6AHD

The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
00000398biological_processmRNA splicing, via spliceosome
00001527cellular_componentmicrofibril
00003723molecular_functionRNA binding
00005515molecular_functionprotein binding
00005634cellular_componentnucleus
00005654cellular_componentnucleoplasm
00005681cellular_componentspliceosomal complex
00005684cellular_componentU2-type spliceosomal complex
00005813cellular_componentcentrosome
00006397biological_processmRNA processing
00008380biological_processRNA splicing
00071005cellular_componentU2-type precatalytic spliceosome
10000245biological_processspliceosomal complex assembly
10000375biological_processRNA splicing, via transesterification reactions
10000398biological_processmRNA splicing, via spliceosome
10003723molecular_functionRNA binding
10003729molecular_functionmRNA binding
10005515molecular_functionprotein binding
10005634cellular_componentnucleus
10005654cellular_componentnucleoplasm
10005681cellular_componentspliceosomal complex
10005684cellular_componentU2-type spliceosomal complex
10005686cellular_componentU2 snRNP
10005689cellular_componentU12-type spliceosomal complex
10005730cellular_componentnucleolus
10006338biological_processchromatin remodeling
10006397biological_processmRNA processing
10008380biological_processRNA splicing
10016607cellular_componentnuclear speck
10034693cellular_componentU11/U12 snRNP
10045943biological_processpositive regulation of transcription by RNA polymerase I
10045944biological_processpositive regulation of transcription by RNA polymerase II
10045945biological_processpositive regulation of transcription by RNA polymerase III
10071004cellular_componentU2-type prespliceosome
10071005cellular_componentU2-type precatalytic spliceosome
10071013cellular_componentcatalytic step 2 spliceosome
10110016cellular_componentB-WICH complex
11903241biological_processU2-type prespliceosome assembly
11990935molecular_functionsplicing factor binding
20000398biological_processmRNA splicing, via spliceosome
20003723molecular_functionRNA binding
20005515molecular_functionprotein binding
20005634cellular_componentnucleus
20005654cellular_componentnucleoplasm
20005681cellular_componentspliceosomal complex
20005684cellular_componentU2-type spliceosomal complex
20005686cellular_componentU2 snRNP
20005689cellular_componentU12-type spliceosomal complex
20006397biological_processmRNA processing
20008380biological_processRNA splicing
20016607cellular_componentnuclear speck
20071005cellular_componentU2-type precatalytic spliceosome
20071011cellular_componentprecatalytic spliceosome
20071013cellular_componentcatalytic step 2 spliceosome
21903241biological_processU2-type prespliceosome assembly
30000124cellular_componentSAGA complex
30000375biological_processRNA splicing, via transesterification reactions
30000398biological_processmRNA splicing, via spliceosome
30003676molecular_functionnucleic acid binding
30005515molecular_functionprotein binding
30005634cellular_componentnucleus
30005654cellular_componentnucleoplasm
30005681cellular_componentspliceosomal complex
30005684cellular_componentU2-type spliceosomal complex
30005686cellular_componentU2 snRNP
30005689cellular_componentU12-type spliceosomal complex
30005730cellular_componentnucleolus
30006282biological_processregulation of DNA repair
30006397biological_processmRNA processing
30008380biological_processRNA splicing
30030620molecular_functionU2 snRNA binding
30042177biological_processnegative regulation of protein catabolic process
30043484biological_processregulation of RNA splicing
30044877molecular_functionprotein-containing complex binding
30045893biological_processpositive regulation of DNA-templated transcription
30071005cellular_componentU2-type precatalytic spliceosome
30071013cellular_componentcatalytic step 2 spliceosome
31903241biological_processU2-type prespliceosome assembly
40000375biological_processRNA splicing, via transesterification reactions
40000398biological_processmRNA splicing, via spliceosome
40003676molecular_functionnucleic acid binding
40003723molecular_functionRNA binding
40005515molecular_functionprotein binding
40005634cellular_componentnucleus
40005654cellular_componentnucleoplasm
40005681cellular_componentspliceosomal complex
40005684cellular_componentU2-type spliceosomal complex
40005686cellular_componentU2 snRNP
40005689cellular_componentU12-type spliceosomal complex
40005730cellular_componentnucleolus
40006397biological_processmRNA processing
40008380biological_processRNA splicing
40048026biological_processpositive regulation of mRNA splicing, via spliceosome
40071005cellular_componentU2-type precatalytic spliceosome
41903241biological_processU2-type prespliceosome assembly
41990935molecular_functionsplicing factor binding
50000398biological_processmRNA splicing, via spliceosome
50001825biological_processblastocyst formation
50003676molecular_functionnucleic acid binding
50003723molecular_functionRNA binding
50003729molecular_functionmRNA binding
50005515molecular_functionprotein binding
50005634cellular_componentnucleus
50005654cellular_componentnucleoplasm
50005681cellular_componentspliceosomal complex
50005684cellular_componentU2-type spliceosomal complex
50005686cellular_componentU2 snRNP
50005689cellular_componentU12-type spliceosomal complex
50006397biological_processmRNA processing
50008380biological_processRNA splicing
50071011cellular_componentprecatalytic spliceosome
50071013cellular_componentcatalytic step 2 spliceosome
51903241biological_processU2-type prespliceosome assembly
60000398biological_processmRNA splicing, via spliceosome
60003677molecular_functionDNA binding
60003723molecular_functionRNA binding
60005515molecular_functionprotein binding
60005634cellular_componentnucleus
60005654cellular_componentnucleoplasm
60005681cellular_componentspliceosomal complex
60005684cellular_componentU2-type spliceosomal complex
60005686cellular_componentU2 snRNP
60005689cellular_componentU12-type spliceosomal complex
60006397biological_processmRNA processing
60008270molecular_functionzinc ion binding
60008380biological_processRNA splicing
60016363cellular_componentnuclear matrix
60016607cellular_componentnuclear speck
60045893biological_processpositive regulation of DNA-templated transcription
60046872molecular_functionmetal ion binding
60048863biological_processstem cell differentiation
60071005cellular_componentU2-type precatalytic spliceosome
60071011cellular_componentprecatalytic spliceosome
60071013cellular_componentcatalytic step 2 spliceosome
61903241biological_processU2-type prespliceosome assembly
70000124cellular_componentSAGA complex
70000398biological_processmRNA splicing, via spliceosome
70003723molecular_functionRNA binding
70005515molecular_functionprotein binding
70005634cellular_componentnucleus
70005654cellular_componentnucleoplasm
70005681cellular_componentspliceosomal complex
70005684cellular_componentU2-type spliceosomal complex
70005686cellular_componentU2 snRNP
70005689cellular_componentU12-type spliceosomal complex
70006282biological_processregulation of DNA repair
70006397biological_processmRNA processing
70008380biological_processRNA splicing
70043484biological_processregulation of RNA splicing
70045893biological_processpositive regulation of DNA-templated transcription
70071005cellular_componentU2-type precatalytic spliceosome
70071011cellular_componentprecatalytic spliceosome
71903241biological_processU2-type prespliceosome assembly
71990935molecular_functionsplicing factor binding
80000398biological_processmRNA splicing, via spliceosome
80003676molecular_functionnucleic acid binding
80003677molecular_functionDNA binding
80005515molecular_functionprotein binding
80005634cellular_componentnucleus
80005654cellular_componentnucleoplasm
80005681cellular_componentspliceosomal complex
80006397biological_processmRNA processing
80008270molecular_functionzinc ion binding
80008380biological_processRNA splicing
80046540cellular_componentU4/U6 x U5 tri-snRNP complex
80046872molecular_functionmetal ion binding
80071005cellular_componentU2-type precatalytic spliceosome
90000387biological_processspliceosomal snRNP assembly
90000398biological_processmRNA splicing, via spliceosome
90000481biological_processmaturation of 5S rRNA
90003723molecular_functionRNA binding
90005515molecular_functionprotein binding
90005634cellular_componentnucleus
90005654cellular_componentnucleoplasm
90005681cellular_componentspliceosomal complex
90005737cellular_componentcytoplasm
90005794cellular_componentGolgi apparatus
90005829cellular_componentcytosol
90006397biological_processmRNA processing
90008380biological_processRNA splicing
90015030cellular_componentCajal body
90016607cellular_componentnuclear speck
90045292biological_processmRNA cis splicing, via spliceosome
90045585biological_processpositive regulation of cytotoxic T cell differentiation
90046540cellular_componentU4/U6 x U5 tri-snRNP complex
90071005cellular_componentU2-type precatalytic spliceosome
90071013cellular_componentcatalytic step 2 spliceosome
A0000244biological_processspliceosomal tri-snRNP complex assembly
A0000375biological_processRNA splicing, via transesterification reactions
A0000398biological_processmRNA splicing, via spliceosome
A0003723molecular_functionRNA binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005681cellular_componentspliceosomal complex
A0005682cellular_componentU5 snRNP
A0006397biological_processmRNA processing
A0008233molecular_functionpeptidase activity
A0008237molecular_functionmetallopeptidase activity
A0008380biological_processRNA splicing
A0016020cellular_componentmembrane
A0016607cellular_componentnuclear speck
A0017070molecular_functionU6 snRNA binding
A0030532cellular_componentsmall nuclear ribonucleoprotein complex
A0030619molecular_functionU1 snRNA binding
A0030620molecular_functionU2 snRNA binding
A0030623molecular_functionU5 snRNA binding
A0046540cellular_componentU4/U6 x U5 tri-snRNP complex
A0070530molecular_functionK63-linked polyubiquitin modification-dependent protein binding
A0071005cellular_componentU2-type precatalytic spliceosome
A0071006cellular_componentU2-type catalytic step 1 spliceosome
A0071007cellular_componentU2-type catalytic step 2 spliceosome
A0071013cellular_componentcatalytic step 2 spliceosome
A0071222biological_processcellular response to lipopolysaccharide
A0071356biological_processcellular response to tumor necrosis factor
A0097157molecular_functionpre-mRNA intronic binding
A0140492molecular_functionmetal-dependent deubiquitinase activity
A1990904cellular_componentribonucleoprotein complex
A00000398biological_processmRNA splicing, via spliceosome
A00005515molecular_functionprotein binding
A00005634cellular_componentnucleus
A00005654cellular_componentnucleoplasm
A00005737cellular_componentcytoplasm
A00015030cellular_componentCajal body
A00031386molecular_functionprotein tag activity
A00036211biological_processprotein modification process
A01903955biological_processpositive regulation of protein targeting to mitochondrion
C0000166molecular_functionnucleotide binding
C0000398biological_processmRNA splicing, via spliceosome
C0003723molecular_functionRNA binding
C0003924molecular_functionGTPase activity
C0005515molecular_functionprotein binding
C0005525molecular_functionGTP binding
C0005634cellular_componentnucleus
C0005654cellular_componentnucleoplasm
C0005681cellular_componentspliceosomal complex
C0005829cellular_componentcytosol
C0006397biological_processmRNA processing
C0008380biological_processRNA splicing
C0015030cellular_componentCajal body
C0016020cellular_componentmembrane
C0016607cellular_componentnuclear speck
C0030623molecular_functionU5 snRNA binding
C0042220biological_processresponse to cocaine
C0043231cellular_componentintracellular membrane-bounded organelle
C0046540cellular_componentU4/U6 x U5 tri-snRNP complex
C0071005cellular_componentU2-type precatalytic spliceosome
C0071007cellular_componentU2-type catalytic step 2 spliceosome
C0071013cellular_componentcatalytic step 2 spliceosome
C0071466biological_processcellular response to xenobiotic stimulus
D0000166molecular_functionnucleotide binding
D0000354biological_processcis assembly of pre-catalytic spliceosome
D0000388biological_processspliceosome conformational change to release U4 (or U4atac) and U1 (or U11)
D0000398biological_processmRNA splicing, via spliceosome
D0001649biological_processosteoblast differentiation
D0003676molecular_functionnucleic acid binding
D0003723molecular_functionRNA binding
D0003724molecular_functionRNA helicase activity
D0004386molecular_functionhelicase activity
D0005515molecular_functionprotein binding
D0005524molecular_functionATP binding
D0005634cellular_componentnucleus
D0005654cellular_componentnucleoplasm
D0005681cellular_componentspliceosomal complex
D0005682cellular_componentU5 snRNP
D0006397biological_processmRNA processing
D0008380biological_processRNA splicing
D0016020cellular_componentmembrane
D0016787molecular_functionhydrolase activity
D0016887molecular_functionATP hydrolysis activity
D0042802molecular_functionidentical protein binding
D0046540cellular_componentU4/U6 x U5 tri-snRNP complex
D0071005cellular_componentU2-type precatalytic spliceosome
D0071006cellular_componentU2-type catalytic step 1 spliceosome
D0071013cellular_componentcatalytic step 2 spliceosome
D0071840biological_processcellular component organization or biogenesis
E0000375biological_processRNA splicing, via transesterification reactions
E0000398biological_processmRNA splicing, via spliceosome
E0003723molecular_functionRNA binding
E0005515molecular_functionprotein binding
E0005634cellular_componentnucleus
E0005654cellular_componentnucleoplasm
E0005681cellular_componentspliceosomal complex
E0005682cellular_componentU5 snRNP
E0005732cellular_componentsno(s)RNA-containing ribonucleoprotein complex
E0005829cellular_componentcytosol
E0006396biological_processRNA processing
E0006397biological_processmRNA processing
E0008380biological_processRNA splicing
E0016607cellular_componentnuclear speck
E0046540cellular_componentU4/U6 x U5 tri-snRNP complex
E0071007cellular_componentU2-type catalytic step 2 spliceosome
E0071013cellular_componentcatalytic step 2 spliceosome
J0000244biological_processspliceosomal tri-snRNP complex assembly
J0000375biological_processRNA splicing, via transesterification reactions
J0000398biological_processmRNA splicing, via spliceosome
J0003723molecular_functionRNA binding
J0005515molecular_functionprotein binding
J0005634cellular_componentnucleus
J0005654cellular_componentnucleoplasm
J0005681cellular_componentspliceosomal complex
J0005829cellular_componentcytosol
J0006397biological_processmRNA processing
J0008380biological_processRNA splicing
J0015030cellular_componentCajal body
J0016607cellular_componentnuclear speck
J0032991cellular_componentprotein-containing complex
J0042802molecular_functionidentical protein binding
J0046540cellular_componentU4/U6 x U5 tri-snRNP complex
J0071005cellular_componentU2-type precatalytic spliceosome
K0000375biological_processRNA splicing, via transesterification reactions
K0000398biological_processmRNA splicing, via spliceosome
K0005515molecular_functionprotein binding
K0005634cellular_componentnucleus
K0005654cellular_componentnucleoplasm
K0005681cellular_componentspliceosomal complex
K0006396biological_processRNA processing
K0006397biological_processmRNA processing
K0008380biological_processRNA splicing
K0015030cellular_componentCajal body
K0016607cellular_componentnuclear speck
K0017070molecular_functionU6 snRNA binding
K0030621molecular_functionU4 snRNA binding
K0046540cellular_componentU4/U6 x U5 tri-snRNP complex
K0071001cellular_componentU4/U6 snRNP
K0071005cellular_componentU2-type precatalytic spliceosome
K0097525cellular_componentspliceosomal snRNP complex
L0000244biological_processspliceosomal tri-snRNP complex assembly
L0000398biological_processmRNA splicing, via spliceosome
L0003723molecular_functionRNA binding
L0005515molecular_functionprotein binding
L0005634cellular_componentnucleus
L0005654cellular_componentnucleoplasm
L0005681cellular_componentspliceosomal complex
L0005684cellular_componentU2-type spliceosomal complex
L0005687cellular_componentU4 snRNP
L0005690cellular_componentU4atac snRNP
L0006397biological_processmRNA processing
L0008380biological_processRNA splicing
L0015030cellular_componentCajal body
L0016607cellular_componentnuclear speck
L0030621molecular_functionU4 snRNA binding
L0030622molecular_functionU4atac snRNA binding
L0030674molecular_functionprotein-macromolecule adaptor activity
L0042802molecular_functionidentical protein binding
L0043021molecular_functionribonucleoprotein complex binding
L0046540cellular_componentU4/U6 x U5 tri-snRNP complex
L0048254biological_processsnoRNA localization
L0070990molecular_functionsnRNP binding
L0071005cellular_componentU2-type precatalytic spliceosome
L0071011cellular_componentprecatalytic spliceosome
L0071166biological_processribonucleoprotein complex localization
L0071339cellular_componentMLL1 complex
L0097526cellular_componentspliceosomal tri-snRNP complex
L1990904cellular_componentribonucleoprotein complex
M0000398biological_processmRNA splicing, via spliceosome
M0000470biological_processmaturation of LSU-rRNA
M0000492biological_processbox C/D snoRNP assembly
M0001651cellular_componentdense fibrillar component
M0003723molecular_functionRNA binding
M0005515molecular_functionprotein binding
M0005634cellular_componentnucleus
M0005654cellular_componentnucleoplasm
M0005681cellular_componentspliceosomal complex
M0005690cellular_componentU4atac snRNP
M0005730cellular_componentnucleolus
M0006397biological_processmRNA processing
M0007338biological_processsingle fertilization
M0008380biological_processRNA splicing
M0022625cellular_componentcytosolic large ribosomal subunit
M0030490biological_processmaturation of SSU-rRNA
M0030515molecular_functionsnoRNA binding
M0030621molecular_functionU4 snRNA binding
M0030622molecular_functionU4atac snRNA binding
M0031428cellular_componentbox C/D methylation guide snoRNP complex
M0032040cellular_componentsmall-subunit processome
M0032991cellular_componentprotein-containing complex
M0034511molecular_functionU3 snoRNA binding
M0034512molecular_functionbox C/D sno(s)RNA binding
M0042254biological_processribosome biogenesis
M0042274biological_processribosomal small subunit biogenesis
M0046540cellular_componentU4/U6 x U5 tri-snRNP complex
M0051117molecular_functionATPase binding
M0071005cellular_componentU2-type precatalytic spliceosome
M0071011cellular_componentprecatalytic spliceosome
M1990904cellular_componentribonucleoprotein complex
N0000244biological_processspliceosomal tri-snRNP complex assembly
N0000245biological_processspliceosomal complex assembly
N0000375biological_processRNA splicing, via transesterification reactions
N0000398biological_processmRNA splicing, via spliceosome
N0003723molecular_functionRNA binding
N0005515molecular_functionprotein binding
N0005634cellular_componentnucleus
N0005654cellular_componentnucleoplasm
N0005681cellular_componentspliceosomal complex
N0005682cellular_componentU5 snRNP
N0006396biological_processRNA processing
N0006397biological_processmRNA processing
N0006403biological_processRNA localization
N0008380biological_processRNA splicing
N0016020cellular_componentmembrane
N0016607cellular_componentnuclear speck
N0030674molecular_functionprotein-macromolecule adaptor activity
N0042802molecular_functionidentical protein binding
N0043021molecular_functionribonucleoprotein complex binding
N0045944biological_processpositive regulation of transcription by RNA polymerase II
N0046540cellular_componentU4/U6 x U5 tri-snRNP complex
N0071005cellular_componentU2-type precatalytic spliceosome
N0071013cellular_componentcatalytic step 2 spliceosome
N2000630biological_processpositive regulation of miRNA metabolic process
N2000636biological_processpositive regulation of primary miRNA processing
O0000245biological_processspliceosomal complex assembly
O0000375biological_processRNA splicing, via transesterification reactions
O0000398biological_processmRNA splicing, via spliceosome
O0005515molecular_functionprotein binding
O0005634cellular_componentnucleus
O0005654cellular_componentnucleoplasm
O0005681cellular_componentspliceosomal complex
O0005682cellular_componentU5 snRNP
O0005829cellular_componentcytosol
O0006397biological_processmRNA processing
O0007049biological_processcell cycle
O0008380biological_processRNA splicing
O0046540cellular_componentU4/U6 x U5 tri-snRNP complex
O0051301biological_processcell division
O0071005cellular_componentU2-type precatalytic spliceosome
P0000245biological_processspliceosomal complex assembly
P0000387biological_processspliceosomal snRNP assembly
P0000398biological_processmRNA splicing, via spliceosome
P0003723molecular_functionRNA binding
P0005515molecular_functionprotein binding
P0005634cellular_componentnucleus
P0005654cellular_componentnucleoplasm
P0005681cellular_componentspliceosomal complex
P0005682cellular_componentU5 snRNP
P0005684cellular_componentU2-type spliceosomal complex
P0005685cellular_componentU1 snRNP
P0005686cellular_componentU2 snRNP
P0005687cellular_componentU4 snRNP
P0005689cellular_componentU12-type spliceosomal complex
P0005737cellular_componentcytoplasm
P0005829cellular_componentcytosol
P0006397biological_processmRNA processing
P0008380biological_processRNA splicing
P0030532cellular_componentsmall nuclear ribonucleoprotein complex
P0034709cellular_componentmethylosome
P0034715cellular_componentpICln-Sm protein complex
P0034719cellular_componentSMN-Sm protein complex
P0036261biological_process7-methylguanosine cap hypermethylation
P0046540cellular_componentU4/U6 x U5 tri-snRNP complex
P0070062cellular_componentextracellular exosome
P0071005cellular_componentU2-type precatalytic spliceosome
P0071007cellular_componentU2-type catalytic step 2 spliceosome
P0071011cellular_componentprecatalytic spliceosome
P0071013cellular_componentcatalytic step 2 spliceosome
P1903241biological_processU2-type prespliceosome assembly
P1990904cellular_componentribonucleoprotein complex
Q0000387biological_processspliceosomal snRNP assembly
Q0000398biological_processmRNA splicing, via spliceosome
Q0003723molecular_functionRNA binding
Q0005681cellular_componentspliceosomal complex
R0000398biological_processmRNA splicing, via spliceosome
R0003723molecular_functionRNA binding
R0005681cellular_componentspliceosomal complex
S0000245biological_processspliceosomal complex assembly
S0000387biological_processspliceosomal snRNP assembly
S0000398biological_processmRNA splicing, via spliceosome
S0003723molecular_functionRNA binding
S0005515molecular_functionprotein binding
S0005634cellular_componentnucleus
S0005654cellular_componentnucleoplasm
S0005681cellular_componentspliceosomal complex
S0005682cellular_componentU5 snRNP
S0005683cellular_componentU7 snRNP
S0005684cellular_componentU2-type spliceosomal complex
S0005685cellular_componentU1 snRNP
S0005686cellular_componentU2 snRNP
S0005687cellular_componentU4 snRNP
S0005689cellular_componentU12-type spliceosomal complex
S0005737cellular_componentcytoplasm
S0005829cellular_componentcytosol
S0006397biological_processmRNA processing
S0008380biological_processRNA splicing
S0030532cellular_componentsmall nuclear ribonucleoprotein complex
S0034709cellular_componentmethylosome
S0034719cellular_componentSMN-Sm protein complex
S0036261biological_process7-methylguanosine cap hypermethylation
S0043186cellular_componentP granule
S0043229cellular_componentintracellular organelle
S0046540cellular_componentU4/U6 x U5 tri-snRNP complex
S0071004cellular_componentU2-type prespliceosome
S0071005cellular_componentU2-type precatalytic spliceosome
S0071007cellular_componentU2-type catalytic step 2 spliceosome
S0071011cellular_componentprecatalytic spliceosome
S0071013cellular_componentcatalytic step 2 spliceosome
S0097526cellular_componentspliceosomal tri-snRNP complex
S1903241biological_processU2-type prespliceosome assembly
S1990904cellular_componentribonucleoprotein complex
T0000243cellular_componentcommitment complex
T0000387biological_processspliceosomal snRNP assembly
T0000398biological_processmRNA splicing, via spliceosome
T0003723molecular_functionRNA binding
T0005515molecular_functionprotein binding
T0005634cellular_componentnucleus
T0005654cellular_componentnucleoplasm
T0005681cellular_componentspliceosomal complex
T0005682cellular_componentU5 snRNP
T0005683cellular_componentU7 snRNP
T0005684cellular_componentU2-type spliceosomal complex
T0005685cellular_componentU1 snRNP
T0005686cellular_componentU2 snRNP
T0005687cellular_componentU4 snRNP
T0005689cellular_componentU12-type spliceosomal complex
T0005697cellular_componenttelomerase holoenzyme complex
T0005737cellular_componentcytoplasm
T0005829cellular_componentcytosol
T0006396biological_processRNA processing
T0006397biological_processmRNA processing
T0006479biological_processprotein methylation
T0008380biological_processRNA splicing
T0016604cellular_componentnuclear body
T0019899molecular_functionenzyme binding
T0030532cellular_componentsmall nuclear ribonucleoprotein complex
T0034709cellular_componentmethylosome
T0034715cellular_componentpICln-Sm protein complex
T0034719cellular_componentSMN-Sm protein complex
T0036261biological_process7-methylguanosine cap hypermethylation
T0046540cellular_componentU4/U6 x U5 tri-snRNP complex
T0070034molecular_functiontelomerase RNA binding
T0071005cellular_componentU2-type precatalytic spliceosome
T0071007cellular_componentU2-type catalytic step 2 spliceosome
T0071011cellular_componentprecatalytic spliceosome
T0071013cellular_componentcatalytic step 2 spliceosome
T0071208molecular_functionhistone pre-mRNA DCP binding
T0071209molecular_functionU7 snRNA binding
T0097526cellular_componentspliceosomal tri-snRNP complex
T1903241biological_processU2-type prespliceosome assembly
T1990446molecular_functionU1 snRNP binding
T1990904cellular_componentribonucleoprotein complex
U0003723molecular_functionRNA binding
V0000243cellular_componentcommitment complex
V0000245biological_processspliceosomal complex assembly
V0000387biological_processspliceosomal snRNP assembly
V0000398biological_processmRNA splicing, via spliceosome
V0003723molecular_functionRNA binding
V0005515molecular_functionprotein binding
V0005634cellular_componentnucleus
V0005654cellular_componentnucleoplasm
V0005681cellular_componentspliceosomal complex
V0005682cellular_componentU5 snRNP
V0005684cellular_componentU2-type spliceosomal complex
V0005685cellular_componentU1 snRNP
V0005686cellular_componentU2 snRNP
V0005687cellular_componentU4 snRNP
V0005689cellular_componentU12-type spliceosomal complex
V0005737cellular_componentcytoplasm
V0005829cellular_componentcytosol
V0006396biological_processRNA processing
V0006397biological_processmRNA processing
V0008380biological_processRNA splicing
V0030532cellular_componentsmall nuclear ribonucleoprotein complex
V0034709cellular_componentmethylosome
V0034715cellular_componentpICln-Sm protein complex
V0034719cellular_componentSMN-Sm protein complex
V0036261biological_process7-methylguanosine cap hypermethylation
V0043229cellular_componentintracellular organelle
V0046540cellular_componentU4/U6 x U5 tri-snRNP complex
V0071005cellular_componentU2-type precatalytic spliceosome
V0071007cellular_componentU2-type catalytic step 2 spliceosome
V0071011cellular_componentprecatalytic spliceosome
V0071013cellular_componentcatalytic step 2 spliceosome
V0097526cellular_componentspliceosomal tri-snRNP complex
V1903241biological_processU2-type prespliceosome assembly
V1990904cellular_componentribonucleoprotein complex
W0000398biological_processmRNA splicing, via spliceosome
W0000413biological_processprotein peptidyl-prolyl isomerization
W0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
W0005515molecular_functionprotein binding
W0005634cellular_componentnucleus
W0005654cellular_componentnucleoplasm
W0005681cellular_componentspliceosomal complex
W0005737cellular_componentcytoplasm
W0005829cellular_componentcytosol
W0005886cellular_componentplasma membrane
W0006397biological_processmRNA processing
W0006457biological_processprotein folding
W0008380biological_processRNA splicing
W0016018molecular_functioncyclosporin A binding
W0016607cellular_componentnuclear speck
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b0005634cellular_componentnucleus
b0005654cellular_componentnucleoplasm
b0005681cellular_componentspliceosomal complex
b0005682cellular_componentU5 snRNP
b0005684cellular_componentU2-type spliceosomal complex
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b0005687cellular_componentU4 snRNP
b0005689cellular_componentU12-type spliceosomal complex
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h0016604cellular_componentnuclear body
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h0071005cellular_componentU2-type precatalytic spliceosome
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j1990904cellular_componentribonucleoprotein complex
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z0071005cellular_componentU2-type precatalytic spliceosome
z0071011cellular_componentprecatalytic spliceosome
z0120115cellular_componentLsm2-8 complex
z1990904cellular_componentribonucleoprotein complex
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue IHP A 3000
ChainResidue
ALYS442
ATYR580
AHIS584
ALYS606
ALYS609
AHIS610
ATYR613
ALYS623

site_idAC2
Number of Residues20
Detailsbinding site for residue GTP C 1500
ChainResidue
CLEU138
CHIS139
CGLY141
CLYS142
CTHR143
CCYS144
CVAL179
CGLY180
CTHR205
CPRO206
CGLY207
CLYS259
CASP261
CARG262
CSER311
CSER312
CGLN313
CTYR314
CMG1501
APRO335

site_idAC3
Number of Residues3
Detailsbinding site for residue MG C 1501
ChainResidue
CTHR143
CASP204
CGTP1500

Functional Information from PROSITE/UniProt
site_idPS01159
Number of Residues26
DetailsWW_DOMAIN_1 WW/rsp5/WWP domain signature. WvegitsegyhyYYdlisga.SQWEKP
ChainResidueDetails
XTRP128-PRO153
XTRP169-PRO194

site_idPS01082
Number of Residues18
DetailsRIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CedknVPYvfVrSKqaLG
ChainResidueDetails
MCYS73-GLY90

site_idPS00436
Number of Residues12
DetailsPEROXIDASE_2 Peroxidases active site signature. TVrvARVmWHPS
ChainResidueDetails
KTHR323-SER334

site_idPS00028
Number of Residues23
DetailsZINC_FINGER_C2H2_1 Zinc finger C2H2 type domain signature. Cnv..CdcvVkdsinfldHingkkH
ChainResidueDetails
8CYS82-HIS104

site_idPS00290
Number of Residues7
DetailsIG_MHC Immunoglobulins and major histocompatibility complex proteins signature. FVCSATH
ChainResidueDetails
3PHE287-HIS293

site_idPS00170
Number of Residues18
DetailsCSA_PPIASE_1 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. YkgStFHRVIkdFMiQGG
ChainResidueDetails
WTYR60-GLY77

site_idPS00678
Number of Residues15
DetailsWD_REPEATS_1 Trp-Asp (WD) repeats signature. LASAgfDrLILLWNV
ChainResidueDetails
ELEU81-VAL95
ELEU124-SER138
EVAL167-ILE181
EILE208-LEU222
EILE300-THR314
KLEU338-LEU352
KILE422-LEU436
YLEU229-PHE243
YILE364-MET378

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00541, ECO:0000269|PubMed:23045696, ECO:0007744|PDB:4F93
ChainResidueDetails
DALA503
6CYS72
6CYS75
6CYS85
DALA1350
2ARG247
2ARG515
6CYS33
6CYS46
6CYS49
6CYS58
6CYS61

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569
ChainResidueDetails
DSER17
3LYS1171
PSER9
9SER789

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
DSER26
1CYS677
1GLU1205
8LYS39
8LYS55
8LYS61
8LYS70
8LYS102
8LYS123

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:17081983, ECO:0007744|PubMed:18318008, ECO:0007744|PubMed:18691976, ECO:0007744|PubMed:19367720, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569
ChainResidueDetails
DSER225
1THR235
1THR426
kLYS6
kLYS8
PLYS6
PLYS8

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:23186163
ChainResidueDetails
DTHR389
DTHR1428
wSER369

site_idSWS_FT_FI6
Number of Residues1
DetailsMOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:F1LNJ2
ChainResidueDetails
DTYR709
1LYS554
1LYS562

site_idSWS_FT_FI7
Number of Residues1
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861
ChainResidueDetails
DLYS971
2SER861

site_idSWS_FT_FI8
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:Q6P4T2
ChainResidueDetails
DTHR1765
2SER362
9SER598

site_idSWS_FT_FI9
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
DSER2002
2SER435
2SER436

site_idSWS_FT_FI10
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:19690332
ChainResidueDetails
DTHR2131
uLYS131
uLYS424
uLYS499
0LYS381
0LYS415
0LYS418

site_idSWS_FT_FI11
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:19690332
ChainResidueDetails
DSER2133
DSER2135
LLYS478

site_idSWS_FT_FI12
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
DLYS46
9LYS648
9LYS657
9LYS684
9LYS699
9LYS709
9LYS723
9LYS749
9LYS758
9LYS775
9LYS780
9LYS791
2LYS280
2LYS492
2LYS543
2LYS770
2LYS790
2LYS843
2LYS857

site_idSWS_FT_FI13
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:25772364, ECO:0007744|PubMed:28112733
ChainResidueDetails
2LYS400

site_idSWS_FT_FI14
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:28112733
ChainResidueDetails
2LYS412
9LYS188

site_idSWS_FT_FI15
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:23186163
ChainResidueDetails
1THR227

site_idSWS_FT_FI16
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q99NB9
ChainResidueDetails
1SER229

site_idSWS_FT_FI17
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0000269|PubMed:12105215
ChainResidueDetails
1THR244

site_idSWS_FT_FI18
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0000305|PubMed:12105215
ChainResidueDetails
1THR248

site_idSWS_FT_FI19
Number of Residues5
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569
ChainResidueDetails
1THR257
1THR261
1THR278
1THR303
1THR313

site_idSWS_FT_FI20
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:18220336, ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569
ChainResidueDetails
1THR267

site_idSWS_FT_FI21
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:24275569
ChainResidueDetails
1THR273

site_idSWS_FT_FI22
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:24275569
ChainResidueDetails
1SER287

site_idSWS_FT_FI23
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:17081983, ECO:0007744|PubMed:23186163
ChainResidueDetails
1THR296

site_idSWS_FT_FI24
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:17081983
ChainResidueDetails
1THR299

site_idSWS_FT_FI25
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
1SER322

site_idSWS_FT_FI26
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
1THR326

site_idSWS_FT_FI27
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:16964243, ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231
ChainResidueDetails
1THR328

site_idSWS_FT_FI28
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:23186163
ChainResidueDetails
1SER332

site_idSWS_FT_FI29
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:21406692
ChainResidueDetails
1THR341

site_idSWS_FT_FI30
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:21406692
ChainResidueDetails
1SER344

site_idSWS_FT_FI31
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:21406692
ChainResidueDetails
1SER349

site_idSWS_FT_FI32
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:23186163
ChainResidueDetails
1THR350
1THR436

site_idSWS_FT_FI33
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:18691976, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163
ChainResidueDetails
1THR354

site_idSWS_FT_FI34
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:23186163
ChainResidueDetails
1SER400

site_idSWS_FT_FI35
Number of Residues1
DetailsMOD_RES: Phosphothreonine; by DYRK1A => ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:23186163
ChainResidueDetails
1THR434

site_idSWS_FT_FI36
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569
ChainResidueDetails
1SER488

site_idSWS_FT_FI37
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:28112733
ChainResidueDetails
1LYS214

site_idSWS_FT_FI38
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
1LYS430

site_idSWS_FT_FI39
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:25114211, ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:28112733
ChainResidueDetails
1LYS413

218853

PDB entries from 2024-04-24

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