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Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5ZG0

Crystal structure of the GluA2o LBD in complex with glutamate and Compound-1

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0015276	molecular_function	ligand-gated monoatomic ion channel activity
A	0016020	cellular_component	membrane
B	0015276	molecular_function	ligand-gated monoatomic ion channel activity
B	0016020	cellular_component	membrane
C	0015276	molecular_function	ligand-gated monoatomic ion channel activity
C	0016020	cellular_component	membrane
D	0015276	molecular_function	ligand-gated monoatomic ion channel activity
D	0016020	cellular_component	membrane
E	0015276	molecular_function	ligand-gated monoatomic ion channel activity
E	0016020	cellular_component	membrane
F	0015276	molecular_function	ligand-gated monoatomic ion channel activity
F	0016020	cellular_component	membrane

Functional Information from PDB Data

site_id	AC1
Number of Residues	13
Details	binding site for residue GLU A 901

Chain	Residue
A	TYR471
A	GLU726
A	HOH1011
A	HOH1029
A	HOH1067
A	PRO499
A	LEU500
A	THR501
A	ARG506
A	LEU671
A	GLY674
A	SER675
A	THR676

site_id	AC2
Number of Residues	4
Details	binding site for residue ZN A 902

Chain	Residue
A	GLU452
A	HIS456
C	GLU699
C	HOH1298

site_id	AC3
Number of Residues	17
Details	binding site for residue 9C3 B 1001

Chain	Residue
A	ILE502
A	PRO515
A	PHE516
A	MET517
A	SER518
A	SER750
A	LYS751
A	GLY752
A	ASN775
B	ILE502
B	LYS514
B	PRO515
B	SER518
B	SER750
B	LYS751
B	GLY752
B	ASN775

site_id	AC4
Number of Residues	14
Details	binding site for residue GLU B 1002

Chain	Residue
B	TYR471
B	PRO499
B	LEU500
B	THR501
B	ARG506
B	LEU671
B	GLY674
B	SER675
B	THR676
B	GLU726
B	TYR753
B	HOH1107
B	HOH1110
B	HOH1136

site_id	AC5
Number of Residues	4
Details	binding site for residue ZN B 1003

Chain	Residue
B	GLU452
B	LYS455
B	HIS456
B	GLN777

site_id	AC6
Number of Residues	2
Details	binding site for residue ZN B 1004

Chain	Residue
B	HIS456
B	HOH1241

site_id	AC7
Number of Residues	18
Details	binding site for residue 9C3 C 1001

Chain	Residue
C	ILE502
C	LYS514
C	PRO515
C	PHE516
C	SER518
C	SER750
C	LYS751
C	GLY752
C	ASN775
D	ILE502
D	LYS514
D	PRO515
D	PHE516
D	SER518
D	SER750
D	LYS751
D	GLY752
D	ASN775

site_id	AC8
Number of Residues	14
Details	binding site for residue GLU C 1002

Chain	Residue
C	TYR471
C	PRO499
C	LEU500
C	THR501
C	ARG506
C	LEU671
C	GLY674
C	SER675
C	THR676
C	GLU726
C	TYR753
C	HOH1142
C	HOH1145
C	HOH1187

site_id	AC9
Number of Residues	3
Details	binding site for residue ZN C 1003

Chain	Residue
C	GLU452
C	HIS456
C	LEU774

site_id	AD1
Number of Residues	4
Details	binding site for residue ACT C 1004

Chain	Residue
C	ARG713
C	LYS720
C	TYR721
C	HOH1275

site_id	AD2
Number of Residues	6
Details	binding site for residue ACT C 1005

Chain	Residue
C	LYS773
C	GLU776
C	GLN777
C	HOH1103
C	HOH1207
D	LEU504

site_id	AD3
Number of Residues	14
Details	binding site for residue GLU D 901

Chain	Residue
D	TYR471
D	PRO499
D	LEU500
D	THR501
D	ARG506
D	LEU671
D	GLY674
D	SER675
D	THR676
D	GLU726
D	TYR753
D	HOH1049
D	HOH1050
D	HOH1071

site_id	AD4
Number of Residues	3
Details	binding site for residue ZN D 902

Chain	Residue
D	HIS433
D	GLU440
D	ACT906

site_id	AD5
Number of Residues	3
Details	binding site for residue ZN D 903

Chain	Residue
D	GLU452
D	HIS456
D	HOH1201

site_id	AD6
Number of Residues	1
Details	binding site for residue ZN D 904

Chain	Residue
D	ASP689

site_id	AD7
Number of Residues	2
Details	binding site for residue ACT D 905

Chain	Residue
D	ARG713
D	LYS720

site_id	AD8
Number of Residues	5
Details	binding site for residue ACT D 906

Chain	Residue
D	LYS430
D	HIS433
D	GLU440
D	ZN902
D	HOH1011

site_id	AD9
Number of Residues	7
Details	binding site for residue ACT D 907

Chain	Residue
C	LEU504
C	ARG682
C	HOH1203
D	LYS773
D	GLU776
D	GLN777
D	HOH1003

site_id	AE1
Number of Residues	15
Details	binding site for residue 9C3 E 1001

Chain	Residue
E	ILE502
E	PRO515
E	PHE516
E	SER518
E	SER750
E	LYS751
E	GLY752
E	ASN775
F	ILE502
F	LYS514
F	PRO515
F	SER750
F	LYS751
F	GLY752
F	ASN775

site_id	AE2
Number of Residues	14
Details	binding site for residue GLU E 1002

Chain	Residue
E	TYR471
E	PRO499
E	LEU500
E	THR501
E	ARG506
E	LEU671
E	GLY674
E	SER675
E	THR676
E	GLU726
E	TYR753
E	HOH1107
E	HOH1139
E	HOH1159

site_id	AE3
Number of Residues	4
Details	binding site for residue ZN E 1003

Chain	Residue
D	GLU699
D	HOH1195
E	GLU452
E	HIS456

site_id	AE4
Number of Residues	2
Details	binding site for residue ZN E 1004

Chain	Residue
E	HIS433
E	HOH1210

site_id	AE5
Number of Residues	13
Details	binding site for residue GLU F 901

Chain	Residue
F	TYR471
F	PRO499
F	LEU500
F	THR501
F	ARG506
F	GLY674
F	SER675
F	THR676
F	GLU726
F	TYR753
F	HOH1012
F	HOH1017
F	HOH1049

site_id	AE6
Number of Residues	2
Details	binding site for residue ZN F 902

Chain	Residue
F	GLU452
F	HIS456

site_id	AE7
Number of Residues	3
Details	binding site for residue ZN F 903

Chain	Residue
F	ASP475
F	ACT906
F	HOH1050

site_id	AE8
Number of Residues	2
Details	binding site for residue ZN F 904

Chain	Residue
F	HIS433
F	ACT905

site_id	AE9
Number of Residues	3
Details	binding site for residue ACT F 905

Chain	Residue
F	HIS433
F	GLU434
F	ZN904

site_id	AF1
Number of Residues	3
Details	binding site for residue ACT F 906

Chain	Residue
F	ASP475
F	THR478
F	ZN903

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	24
Details	Binding site: {"evidences":[{"source":"PubMed","id":"20614889","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2XHD","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	6
Details	Binding site: {"evidences":[{"source":"PubMed","id":"20614889","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21531559","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2XHD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3R7X","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	6
Details	Binding site: {"evidences":[{"source":"PubMed","id":"20614889","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21531559","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2XHD","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	6
Details	Modified residue: {"description":"Phosphoserine; by PKC","evidences":[{"source":"UniProtKB","id":"P19491","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	6
Details	Modified residue: {"description":"Phosphoserine; by PKG","evidences":[{"source":"UniProtKB","id":"P19491","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	6
Details	Glycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

246031

PDB entries from 2025-12-10

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