5YPM
Crystal structure of NDM-1 bound to hydrolyzed meropenem representing an EI1 complex
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0016787 | molecular_function | hydrolase activity |
A | 0017001 | biological_process | antibiotic catabolic process |
A | 0046872 | molecular_function | metal ion binding |
B | 0016787 | molecular_function | hydrolase activity |
B | 0017001 | biological_process | antibiotic catabolic process |
B | 0046872 | molecular_function | metal ion binding |
C | 0016787 | molecular_function | hydrolase activity |
C | 0017001 | biological_process | antibiotic catabolic process |
C | 0046872 | molecular_function | metal ion binding |
D | 0016787 | molecular_function | hydrolase activity |
D | 0017001 | biological_process | antibiotic catabolic process |
D | 0046872 | molecular_function | metal ion binding |
E | 0016787 | molecular_function | hydrolase activity |
E | 0017001 | biological_process | antibiotic catabolic process |
E | 0046872 | molecular_function | metal ion binding |
F | 0016787 | molecular_function | hydrolase activity |
F | 0017001 | biological_process | antibiotic catabolic process |
F | 0046872 | molecular_function | metal ion binding |
G | 0016787 | molecular_function | hydrolase activity |
G | 0017001 | biological_process | antibiotic catabolic process |
G | 0046872 | molecular_function | metal ion binding |
H | 0016787 | molecular_function | hydrolase activity |
H | 0017001 | biological_process | antibiotic catabolic process |
H | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | binding site for residue ZN A 301 |
Chain | Residue |
A | HIS120 |
A | HIS122 |
A | HIS189 |
A | 8YL303 |
site_id | AC2 |
Number of Residues | 4 |
Details | binding site for residue ZN A 302 |
Chain | Residue |
A | ASP124 |
A | CYS208 |
A | HIS250 |
A | 8YL303 |
site_id | AC3 |
Number of Residues | 11 |
Details | binding site for residue 8YL A 303 |
Chain | Residue |
A | ASP124 |
A | HIS189 |
A | CYS208 |
A | LYS211 |
A | ASN220 |
A | HIS250 |
A | ZN301 |
A | ZN302 |
H | GLY69 |
H | 8YL303 |
A | HIS122 |
site_id | AC4 |
Number of Residues | 6 |
Details | binding site for residue SO4 A 304 |
Chain | Residue |
A | ARG234 |
A | THR260 |
A | ARG264 |
A | HOH405 |
A | HOH463 |
A | HOH478 |
site_id | AC5 |
Number of Residues | 4 |
Details | binding site for residue ZN B 301 |
Chain | Residue |
B | HIS120 |
B | HIS122 |
B | HIS189 |
B | 8YL303 |
site_id | AC6 |
Number of Residues | 4 |
Details | binding site for residue ZN B 302 |
Chain | Residue |
B | ASP124 |
B | CYS208 |
B | HIS250 |
B | 8YL303 |
site_id | AC7 |
Number of Residues | 10 |
Details | binding site for residue 8YL B 303 |
Chain | Residue |
B | PHE70 |
B | HIS122 |
B | ASP124 |
B | HIS189 |
B | CYS208 |
B | LYS211 |
B | ASN220 |
B | HIS250 |
B | ZN301 |
B | ZN302 |
site_id | AC8 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 304 |
Chain | Residue |
B | ARG234 |
B | THR260 |
B | ARG264 |
site_id | AC9 |
Number of Residues | 4 |
Details | binding site for residue ZN C 301 |
Chain | Residue |
C | HIS120 |
C | HIS122 |
C | HIS189 |
C | 8YL303 |
site_id | AD1 |
Number of Residues | 4 |
Details | binding site for residue ZN C 302 |
Chain | Residue |
C | ASP124 |
C | CYS208 |
C | HIS250 |
C | 8YL303 |
site_id | AD2 |
Number of Residues | 11 |
Details | binding site for residue 8YL C 303 |
Chain | Residue |
C | HIS122 |
C | ASP124 |
C | HIS189 |
C | CYS208 |
C | LYS211 |
C | ASN220 |
C | HIS250 |
C | ZN301 |
C | ZN302 |
F | GLY69 |
F | PHE70 |
site_id | AD3 |
Number of Residues | 3 |
Details | binding site for residue SO4 C 304 |
Chain | Residue |
C | ARG234 |
C | ARG264 |
C | HOH484 |
site_id | AD4 |
Number of Residues | 4 |
Details | binding site for residue ZN D 301 |
Chain | Residue |
D | HIS120 |
D | HIS122 |
D | HIS189 |
D | 8YL303 |
site_id | AD5 |
Number of Residues | 4 |
Details | binding site for residue ZN D 302 |
Chain | Residue |
D | ASP124 |
D | CYS208 |
D | HIS250 |
D | 8YL303 |
site_id | AD6 |
Number of Residues | 15 |
Details | binding site for residue 8YL D 303 |
Chain | Residue |
D | HIS120 |
D | HIS122 |
D | GLN123 |
D | ASP124 |
D | HIS189 |
D | CYS208 |
D | LYS211 |
D | SER217 |
D | GLY219 |
D | ASN220 |
D | HIS250 |
D | ZN301 |
D | ZN302 |
E | GLY69 |
E | 8YL303 |
site_id | AD7 |
Number of Residues | 3 |
Details | binding site for residue SO4 D 304 |
Chain | Residue |
D | ARG234 |
D | THR260 |
D | ARG264 |
site_id | AD8 |
Number of Residues | 5 |
Details | binding site for residue SO4 D 305 |
Chain | Residue |
D | GLN158 |
D | HIS159 |
D | SER160 |
D | HOH405 |
G | HIS261 |
site_id | AD9 |
Number of Residues | 4 |
Details | binding site for residue ZN E 301 |
Chain | Residue |
E | HIS120 |
E | HIS122 |
E | HIS189 |
E | 8YL303 |
site_id | AE1 |
Number of Residues | 4 |
Details | binding site for residue ZN E 302 |
Chain | Residue |
E | ASP124 |
E | CYS208 |
E | HIS250 |
E | 8YL303 |
site_id | AE2 |
Number of Residues | 14 |
Details | binding site for residue 8YL E 303 |
Chain | Residue |
D | GLY69 |
D | 8YL303 |
E | TRP93 |
E | HIS122 |
E | ASP124 |
E | HIS189 |
E | CYS208 |
E | LYS211 |
E | SER217 |
E | GLY219 |
E | ASN220 |
E | HIS250 |
E | ZN301 |
E | ZN302 |
site_id | AE3 |
Number of Residues | 4 |
Details | binding site for residue SO4 E 304 |
Chain | Residue |
E | HIS261 |
E | ARG264 |
E | HOH403 |
E | HOH465 |
site_id | AE4 |
Number of Residues | 4 |
Details | binding site for residue ZN F 301 |
Chain | Residue |
F | HIS120 |
F | HIS122 |
F | HIS189 |
F | 8YL303 |
site_id | AE5 |
Number of Residues | 4 |
Details | binding site for residue ZN F 302 |
Chain | Residue |
F | ASP124 |
F | CYS208 |
F | HIS250 |
F | 8YL303 |
site_id | AE6 |
Number of Residues | 12 |
Details | binding site for residue 8YL F 303 |
Chain | Residue |
C | GLY69 |
F | HIS122 |
F | ASP124 |
F | HIS189 |
F | CYS208 |
F | LYS211 |
F | GLY219 |
F | ASN220 |
F | HIS250 |
F | ZN301 |
F | ZN302 |
F | HOH468 |
site_id | AE7 |
Number of Residues | 4 |
Details | binding site for residue SO4 F 304 |
Chain | Residue |
B | HIS159 |
B | SER160 |
F | HIS261 |
F | HOH401 |
site_id | AE8 |
Number of Residues | 4 |
Details | binding site for residue ZN G 301 |
Chain | Residue |
G | HIS120 |
G | HIS122 |
G | HIS189 |
G | 8YL303 |
site_id | AE9 |
Number of Residues | 4 |
Details | binding site for residue ZN G 302 |
Chain | Residue |
G | ASP124 |
G | CYS208 |
G | HIS250 |
G | 8YL303 |
site_id | AF1 |
Number of Residues | 9 |
Details | binding site for residue 8YL G 303 |
Chain | Residue |
G | HIS122 |
G | ASP124 |
G | HIS189 |
G | CYS208 |
G | ASN220 |
G | HIS250 |
G | ZN301 |
G | ZN302 |
G | HOH401 |
site_id | AF2 |
Number of Residues | 4 |
Details | binding site for residue ZN H 301 |
Chain | Residue |
H | HIS120 |
H | HIS122 |
H | HIS189 |
H | 8YL303 |
site_id | AF3 |
Number of Residues | 4 |
Details | binding site for residue ZN H 302 |
Chain | Residue |
H | ASP124 |
H | CYS208 |
H | HIS250 |
H | 8YL303 |
site_id | AF4 |
Number of Residues | 16 |
Details | binding site for residue 8YL H 303 |
Chain | Residue |
A | GLY69 |
A | PHE70 |
A | 8YL303 |
H | MET67 |
H | HIS122 |
H | ASP124 |
H | HIS189 |
H | CYS208 |
H | LYS211 |
H | SER217 |
H | GLY219 |
H | ASN220 |
H | HIS250 |
H | ZN301 |
H | ZN302 |
H | HOH483 |