5YPM
Crystal structure of NDM-1 bound to hydrolyzed meropenem representing an EI1 complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-05-03 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97853 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 69.790, 74.020, 155.040 |
Unit cell angles | 90.00, 90.44, 90.00 |
Refinement procedure
Resolution | 41.684 - 2.150 |
R-factor | 0.1966 |
Rwork | 0.196 |
R-free | 0.22540 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4rl0 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.874 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.340 | 2.150 |
High resolution limit [Å] | 2.150 | 2.120 |
Number of reflections | 161125 | |
<I/σ(I)> | 7.1 | 2.11 |
Completeness [%] | 95.4 | 93.9 |
Redundancy | 2.12 | 1.89 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 28% (w/v) PEG 3350, 0.1M Bis-Tris, pH 5.8, 0.2M ammonium sulfate |