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5YO1

Structure of ePepN E298A mutant in complex with Puromycin

Functional Information from GO Data
ChainGOidnamespacecontents
A0004177molecular_functionaminopeptidase activity
A0005515molecular_functionprotein binding
A0005886cellular_componentplasma membrane
A0006508biological_processproteolysis
A0008237molecular_functionmetallopeptidase activity
A0008270molecular_functionzinc ion binding
A0042802molecular_functionidentical protein binding
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ZN A 901
ChainResidue
AHIS297
AHIS301
AGLU320
AHOH1148
AHOH1645

site_idAC2
Number of Residues21
Detailsbinding site for residue PUY A 902
ChainResidue
ATYR376
ATYR381
AGLU382
AGLY787
AARG825
APUY903
AGOL912
AHOH1023
AHOH1062
AHOH1106
AHOH1120
AHOH1196
AHOH1247
AHOH1270
AHOH1335
AHOH1466
AHOH1486
AMET260
AARG293
AHIS297
AASP327

site_idAC3
Number of Residues16
Detailsbinding site for residue PUY A 903
ChainResidue
ATYR275
AASP290
AARG293
AGLU382
APUY902
AHOH1019
AHOH1023
AHOH1106
AHOH1208
AHOH1220
AHOH1283
AHOH1335
AHOH1440
AHOH1559
AHOH1627
AHOH1668

site_idAC4
Number of Residues7
Detailsbinding site for residue NA A 904
ChainResidue
ATYR18
AARG44
ASER48
AALA50
AASN85
ALEU86
AHOH1660

site_idAC5
Number of Residues7
Detailsbinding site for residue GOL A 905
ChainResidue
ALEU532
ATRP546
AASP566
AALA567
ASER570
AHOH1017
AHOH1063

site_idAC6
Number of Residues5
Detailsbinding site for residue GOL A 906
ChainResidue
ALEU61
AGLU671
AHOH1002
AHOH1232
AHOH1624

site_idAC7
Number of Residues11
Detailsbinding site for residue GOL A 907
ChainResidue
ASER63
AVAL64
ATRP71
ATRP74
AARG669
AVAL670
AGLU671
AGOL914
AHOH1002
AHOH1258
AHOH1415

site_idAC8
Number of Residues9
Detailsbinding site for residue GOL A 908
ChainResidue
AARG641
AGLU642
ATHR645
AARG686
APHE690
AALA722
AHOH1155
AHOH1179
AHOH1356

site_idAC9
Number of Residues8
Detailsbinding site for residue GOL A 909
ChainResidue
AMET555
AARG556
AARG564
AALA598
AALA601
AASP605
AILE608
AHOH1277

site_idAD1
Number of Residues6
Detailsbinding site for residue GOL A 910
ChainResidue
AGLU123
AASP312
ATRP313
APHE314
AHOH1218
AHOH1397

site_idAD2
Number of Residues11
Detailsbinding site for residue GOL A 911
ChainResidue
ATHR469
ALYS478
AGLN479
APRO480
AHOH1286
AHOH1341
AHOH1587
AHIS11
AARG14
AGLN467
AARG468

site_idAD3
Number of Residues11
Detailsbinding site for residue GOL A 912
ChainResidue
AGLU355
AASN374
ATHR377
ALEU378
AGLU828
ALYS864
APUY902
AHOH1023
AHOH1062
AHOH1231
AHOH1638

site_idAD4
Number of Residues6
Detailsbinding site for residue GOL A 913
ChainResidue
AASP281
APHE704
ALYS738
ATRP739
AHOH1027
AHOH1108

site_idAD5
Number of Residues5
Detailsbinding site for residue GOL A 914
ChainResidue
ATHR72
ATRP74
AVAL670
AGOL907
AHOH1365

site_idAD6
Number of Residues5
Detailsbinding site for residue GOL A 915
ChainResidue
AALA101
AGLN111
AGLY113
AHOH1008
AHOH1561

site_idAD7
Number of Residues3
Detailsbinding site for residue GOL A 916
ChainResidue
AARG53
AGLU77
AALA80

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000305|PubMed:16885166, ECO:0000305|PubMed:18416562, ECO:0000305|PubMed:19622865
ChainResidueDetails
AALA298

site_idSWS_FT_FI2
Number of Residues5
DetailsBINDING:
ChainResidueDetails
AGLU121
AGLY261
AHIS297
AHIS301
AGLU320

site_idSWS_FT_FI3
Number of Residues1
DetailsSITE: Transition state stabilizer => ECO:0000305
ChainResidueDetails
ATYR381

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PDB entries from 2024-09-11

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