5XPG
Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 6'U7' on the target strand
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0003677 | molecular_function | DNA binding |
A | 0003723 | molecular_function | RNA binding |
A | 0004519 | molecular_function | endonuclease activity |
A | 0004520 | molecular_function | DNA endonuclease activity |
A | 0006260 | biological_process | DNA replication |
A | 0030145 | molecular_function | manganese ion binding |
A | 0044355 | biological_process | clearance of foreign intracellular DNA |
A | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 701 |
Chain | Residue |
A | TRP283 |
A | ARG587 |
A | LEU588 |
A | HIS607 |
site_id | AC2 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 702 |
Chain | Residue |
A | ARG350 |
A | PRO358 |
A | ARG363 |
A | ARG367 |
site_id | AC3 |
Number of Residues | 3 |
Details | binding site for residue MG C 101 |
Chain | Residue |
C | DT1 |
C | DA3 |
A | VAL685 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 3 |
Details | ACT_SITE: ACT_SITE => ECO:0000305|PubMed:18754009, ECO:0000305|PubMed:19092929, ECO:0000305|PubMed:24374628, ECO:0000305|PubMed:28911094 |
Chain | Residue | Details |
A | ASP478 | |
A | ASN546 | |
A | ASP660 |
site_id | SWS_FT_FI2 |
Number of Residues | 1 |
Details | ACT_SITE: ACT_SITE => ECO:0000305|PubMed:24374628, ECO:0000305|PubMed:28911094 |
Chain | Residue | Details |
A | GLU512 |
site_id | SWS_FT_FI3 |
Number of Residues | 1 |
Details | BINDING: BINDING => ECO:0000269|PubMed:24374628, ECO:0000305|PubMed:19812667, ECO:0000305|PubMed:28911094, ECO:0007744|PDB:4KPY, ECO:0007744|PDB:4N76 |
Chain | Residue | Details |
A | ASP478 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:24374628, ECO:0000305|PubMed:19092929, ECO:0000305|PubMed:19812667, ECO:0000305|PubMed:28911094, ECO:0007744|PDB:4KPY, ECO:0007744|PDB:4N76 |
Chain | Residue | Details |
A | ASN546 | |
A | ASP660 |
site_id | SWS_FT_FI5 |
Number of Residues | 1 |
Details | BINDING: BINDING => ECO:0000269|PubMed:24374628, ECO:0000305|PubMed:18754009, ECO:0000305|PubMed:19092929, ECO:0000305|PubMed:19812667, ECO:0000305|PubMed:28911094, ECO:0007744|PDB:4KPY, ECO:0007744|PDB:4N76 |
Chain | Residue | Details |
A | VAL685 |