Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5XJL

Crystal Structure of the Gemin2-binding domain of SMN, Gemin2 in Complex with SmD1/D2/F/E/G from Human

Replaces:  3S6N
Functional Information from GO Data
ChainGOidnamespacecontents
20000245biological_processspliceosomal complex assembly
20000375biological_processRNA splicing, via transesterification reactions
20000387biological_processspliceosomal snRNP assembly
20005515molecular_functionprotein binding
20005634cellular_componentnucleus
20005654cellular_componentnucleoplasm
20005681cellular_componentspliceosomal complex
20005730cellular_componentnucleolus
20005737cellular_componentcytoplasm
20005829cellular_componentcytosol
20006397biological_processmRNA processing
20008380biological_processRNA splicing
20016604cellular_componentnuclear body
20032797cellular_componentSMN complex
20034719cellular_componentSMN-Sm protein complex
20065003biological_processprotein-containing complex assembly
20097504cellular_componentGemini of Cajal bodies
A0000243cellular_componentcommitment complex
A0000245biological_processspliceosomal complex assembly
A0000387biological_processspliceosomal snRNP assembly
A0000398biological_processmRNA splicing, via spliceosome
A0003723molecular_functionRNA binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005681cellular_componentspliceosomal complex
A0005682cellular_componentU5 snRNP
A0005684cellular_componentU2-type spliceosomal complex
A0005685cellular_componentU1 snRNP
A0005686cellular_componentU2 snRNP
A0005687cellular_componentU4 snRNP
A0005689cellular_componentU12-type spliceosomal complex
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006396biological_processRNA processing
A0006397biological_processmRNA processing
A0008380biological_processRNA splicing
A0030532cellular_componentsmall nuclear ribonucleoprotein complex
A0034709cellular_componentmethylosome
A0034715cellular_componentpICln-Sm protein complex
A0034719cellular_componentSMN-Sm protein complex
A0036261biological_process7-methylguanosine cap hypermethylation
A0046540cellular_componentU4/U6 x U5 tri-snRNP complex
A0071005cellular_componentU2-type precatalytic spliceosome
A0071007cellular_componentU2-type catalytic step 2 spliceosome
A0071011cellular_componentprecatalytic spliceosome
A0071013cellular_componentcatalytic step 2 spliceosome
A0097526cellular_componentspliceosomal tri-snRNP complex
A1903241biological_processU2-type prespliceosome assembly
A1990446molecular_functionU1 snRNP binding
A1990904cellular_componentribonucleoprotein complex
B0000245biological_processspliceosomal complex assembly
B0000387biological_processspliceosomal snRNP assembly
B0000398biological_processmRNA splicing, via spliceosome
B0003723molecular_functionRNA binding
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005654cellular_componentnucleoplasm
B0005681cellular_componentspliceosomal complex
B0005682cellular_componentU5 snRNP
B0005684cellular_componentU2-type spliceosomal complex
B0005685cellular_componentU1 snRNP
B0005686cellular_componentU2 snRNP
B0005687cellular_componentU4 snRNP
B0005689cellular_componentU12-type spliceosomal complex
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006397biological_processmRNA processing
B0008380biological_processRNA splicing
B0030532cellular_componentsmall nuclear ribonucleoprotein complex
B0034709cellular_componentmethylosome
B0034715cellular_componentpICln-Sm protein complex
B0034719cellular_componentSMN-Sm protein complex
B0036261biological_process7-methylguanosine cap hypermethylation
B0046540cellular_componentU4/U6 x U5 tri-snRNP complex
B0070062cellular_componentextracellular exosome
B0071005cellular_componentU2-type precatalytic spliceosome
B0071007cellular_componentU2-type catalytic step 2 spliceosome
B0071011cellular_componentprecatalytic spliceosome
B0071013cellular_componentcatalytic step 2 spliceosome
B0097525cellular_componentspliceosomal snRNP complex
B1903241biological_processU2-type prespliceosome assembly
B1990904cellular_componentribonucleoprotein complex
E0000245biological_processspliceosomal complex assembly
E0000387biological_processspliceosomal snRNP assembly
E0000398biological_processmRNA splicing, via spliceosome
E0003723molecular_functionRNA binding
E0005515molecular_functionprotein binding
E0005634cellular_componentnucleus
E0005654cellular_componentnucleoplasm
E0005681cellular_componentspliceosomal complex
E0005682cellular_componentU5 snRNP
E0005683cellular_componentU7 snRNP
E0005684cellular_componentU2-type spliceosomal complex
E0005685cellular_componentU1 snRNP
E0005686cellular_componentU2 snRNP
E0005687cellular_componentU4 snRNP
E0005689cellular_componentU12-type spliceosomal complex
E0005697cellular_componenttelomerase holoenzyme complex
E0005737cellular_componentcytoplasm
E0005829cellular_componentcytosol
E0006397biological_processmRNA processing
E0008380biological_processRNA splicing
E0030532cellular_componentsmall nuclear ribonucleoprotein complex
E0034709cellular_componentmethylosome
E0034715cellular_componentpICln-Sm protein complex
E0034719cellular_componentSMN-Sm protein complex
E0036261biological_process7-methylguanosine cap hypermethylation
E0046540cellular_componentU4/U6 x U5 tri-snRNP complex
E0071005cellular_componentU2-type precatalytic spliceosome
E0071007cellular_componentU2-type catalytic step 2 spliceosome
E0071011cellular_componentprecatalytic spliceosome
E0071013cellular_componentcatalytic step 2 spliceosome
E1903241biological_processU2-type prespliceosome assembly
E1990904cellular_componentribonucleoprotein complex
F0000387biological_processspliceosomal snRNP assembly
F0000398biological_processmRNA splicing, via spliceosome
F0003723molecular_functionRNA binding
F0005515molecular_functionprotein binding
F0005634cellular_componentnucleus
F0005654cellular_componentnucleoplasm
F0005681cellular_componentspliceosomal complex
F0005682cellular_componentU5 snRNP
F0005683cellular_componentU7 snRNP
F0005684cellular_componentU2-type spliceosomal complex
F0005685cellular_componentU1 snRNP
F0005686cellular_componentU2 snRNP
F0005687cellular_componentU4 snRNP
F0005689cellular_componentU12-type spliceosomal complex
F0005737cellular_componentcytoplasm
F0005829cellular_componentcytosol
F0006397biological_processmRNA processing
F0008380biological_processRNA splicing
F0022618biological_processprotein-RNA complex assembly
F0030532cellular_componentsmall nuclear ribonucleoprotein complex
F0034709cellular_componentmethylosome
F0034715cellular_componentpICln-Sm protein complex
F0034719cellular_componentSMN-Sm protein complex
F0036261biological_process7-methylguanosine cap hypermethylation
F0046540cellular_componentU4/U6 x U5 tri-snRNP complex
F0071005cellular_componentU2-type precatalytic spliceosome
F0071007cellular_componentU2-type catalytic step 2 spliceosome
F0071013cellular_componentcatalytic step 2 spliceosome
F1903241biological_processU2-type prespliceosome assembly
F1990904cellular_componentribonucleoprotein complex
G0000245biological_processspliceosomal complex assembly
G0000387biological_processspliceosomal snRNP assembly
G0000398biological_processmRNA splicing, via spliceosome
G0003723molecular_functionRNA binding
G0005515molecular_functionprotein binding
G0005634cellular_componentnucleus
G0005654cellular_componentnucleoplasm
G0005681cellular_componentspliceosomal complex
G0005682cellular_componentU5 snRNP
G0005683cellular_componentU7 snRNP
G0005684cellular_componentU2-type spliceosomal complex
G0005685cellular_componentU1 snRNP
G0005686cellular_componentU2 snRNP
G0005687cellular_componentU4 snRNP
G0005689cellular_componentU12-type spliceosomal complex
G0005737cellular_componentcytoplasm
G0005829cellular_componentcytosol
G0006397biological_processmRNA processing
G0008380biological_processRNA splicing
G0030532cellular_componentsmall nuclear ribonucleoprotein complex
G0034709cellular_componentmethylosome
G0034719cellular_componentSMN-Sm protein complex
G0036261biological_process7-methylguanosine cap hypermethylation
G0043186cellular_componentP granule
G0046540cellular_componentU4/U6 x U5 tri-snRNP complex
G0071004cellular_componentU2-type prespliceosome
G0071005cellular_componentU2-type precatalytic spliceosome
G0071007cellular_componentU2-type catalytic step 2 spliceosome
G0071011cellular_componentprecatalytic spliceosome
G0071013cellular_componentcatalytic step 2 spliceosome
G0097526cellular_componentspliceosomal tri-snRNP complex
G1903241biological_processU2-type prespliceosome assembly
G1990904cellular_componentribonucleoprotein complex
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"24275569","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues72
DetailsDomain: {"description":"Sm","evidences":[{"source":"PROSITE-ProRule","id":"PRU01346","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues79
DetailsRegion: {"description":"Sufficient for interaction with CLNS1A","evidences":[{"source":"PubMed","id":"11747828","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)","evidences":[{"source":"PubMed","id":"28112733","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

238895

PDB entries from 2025-07-16

PDB statisticsPDBj update infoContact PDBjnumon