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5XIU

Crystal structure of RNF168 UDM2 in complex with Lys63-linked diubiquitin

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue EDO A 501
ChainResidue
ALEU436
AGLU443
AHOH606
BHOH203

site_idAC2
Number of Residues6
Detailsbinding site for residue EDO A 502
ChainResidue
BGLY35
APHE437
AHIS440
ALYS441
BASP32
BLYS33

site_idAC3
Number of Residues8
Detailsbinding site for residue EDO A 503
ChainResidue
ALEU453
AGLU456
AASP458
AHOH603
AHOH623
BARG42
BVAL70
BLEU73

site_idAC4
Number of Residues6
Detailsbinding site for residue EDO B 101
ChainResidue
AGLU433
AGLN454
BTHR7
BLEU8
BTHR9
BLEU69

site_idAC5
Number of Residues4
Detailsbinding site for residue EDO B 102
ChainResidue
BARG54
BASP58
BTYR59
BHOH212

Functional Information from PROSITE/UniProt
site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
BLYS27-ASP52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsSITE: Interacts with activating enzyme
ChainResidueDetails
BARG54
BARG72

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: Essential for function
ChainResidueDetails
BHIS68

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphoserine; by PINK1 => ECO:0000250|UniProtKB:P62979
ChainResidueDetails
BSER65

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: ADP-ribosylglycine => ECO:0000250|UniProtKB:P62979
ChainResidueDetails
BGLY76

site_idSWS_FT_FI5
Number of Residues7
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P62979
ChainResidueDetails
BLYS6
BLYS11
BLYS27
BLYS29
BLYS33
BLYS48
BLYS63

site_idSWS_FT_FI6
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) => ECO:0000255|PROSITE-ProRule:PRU00214
ChainResidueDetails
BGLY76

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PDB entries from 2024-07-17

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