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5WY8

Crystal structure of PTP delta Ig1-Ig3 in complex with IL1RAPL1 Ig1-Ig3

Functional Information from GO Data
ChainGOidnamespacecontents
A0005886cellular_componentplasma membrane
A0007155biological_processcell adhesion
A0007411biological_processaxon guidance
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues90
DetailsDomain: {"description":"Ig-like C2-type 1"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues187
DetailsDomain: {"description":"Ig-like C2-type 2"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues82
DetailsDomain: {"description":"Ig-like C2-type 3"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues9
DetailsRegion: {"description":"Interaction with IL1RAPL1","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues8
DetailsRegion: {"description":"Mini-exon peptide A9; sufficient for interaction with IL1RAPL1","evidences":[{"source":"UniProtKB","id":"Q64487","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues3
DetailsRegion: {"description":"Mini-exon peptide B; required for interaction with SLITRK2 and in the function in pre-synaptic differentiation; Acts as an adjustable linker to control relative positions and orientations of the PTPRD second and third immunoglobilin domains for their simultaneous interactions with the first immunoglobilin domain of IL1RAPL1 and IL1RAP; Modulates affinity for IL1RAPL1 and IL1RAP","evidences":[{"source":"UniProtKB","id":"Q64487","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues1
DetailsSite: {"description":"Required for interaction with IL1RAP","evidences":[{"source":"UniProtKB","id":"Q64487","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues8
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues1
DetailsSite: {"description":"Essential for interaction with PTPRD","evidences":[{"source":"UniProtKB","id":"P59823","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

247947

PDB entries from 2026-01-21

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