5WLW
Crystal Structure of the Human Mitochondrial Cysteine Desulfurase with active Cysteine Loop within ISCU1 active site, coordinating Zn ion. Complexed with human ISD11 and E. coli ACP1 at 3.3A.
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0030170 | molecular_function | pyridoxal phosphate binding |
A | 0031071 | molecular_function | cysteine desulfurase activity |
A | 0044571 | biological_process | [2Fe-2S] cluster assembly |
B | 0005515 | molecular_function | protein binding |
B | 0005634 | cellular_component | nucleus |
B | 0005739 | cellular_component | mitochondrion |
B | 0005759 | cellular_component | mitochondrial matrix |
B | 0016226 | biological_process | iron-sulfur cluster assembly |
B | 0016604 | cellular_component | nuclear body |
B | 0042803 | molecular_function | protein homodimerization activity |
B | 0044571 | biological_process | [2Fe-2S] cluster assembly |
B | 0044572 | biological_process | [4Fe-4S] cluster assembly |
B | 0099128 | cellular_component | mitochondrial [2Fe-2S] assembly complex |
B | 1990221 | cellular_component | L-cysteine desulfurase complex |
B | 1990229 | cellular_component | iron-sulfur cluster assembly complex |
C | 0000035 | molecular_function | acyl binding |
C | 0000036 | molecular_function | acyl carrier activity |
C | 0005515 | molecular_function | protein binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0006633 | biological_process | fatty acid biosynthetic process |
C | 0008289 | molecular_function | lipid binding |
C | 0008610 | biological_process | lipid biosynthetic process |
C | 0009245 | biological_process | lipid A biosynthetic process |
C | 0009410 | biological_process | response to xenobiotic stimulus |
C | 0031177 | molecular_function | phosphopantetheine binding |
D | 0005506 | molecular_function | iron ion binding |
D | 0016226 | biological_process | iron-sulfur cluster assembly |
D | 0051536 | molecular_function | iron-sulfur cluster binding |
E | 0030170 | molecular_function | pyridoxal phosphate binding |
E | 0031071 | molecular_function | cysteine desulfurase activity |
E | 0044571 | biological_process | [2Fe-2S] cluster assembly |
F | 0005515 | molecular_function | protein binding |
F | 0005634 | cellular_component | nucleus |
F | 0005739 | cellular_component | mitochondrion |
F | 0005759 | cellular_component | mitochondrial matrix |
F | 0016226 | biological_process | iron-sulfur cluster assembly |
F | 0016604 | cellular_component | nuclear body |
F | 0042803 | molecular_function | protein homodimerization activity |
F | 0044571 | biological_process | [2Fe-2S] cluster assembly |
F | 0044572 | biological_process | [4Fe-4S] cluster assembly |
F | 0099128 | cellular_component | mitochondrial [2Fe-2S] assembly complex |
F | 1990221 | cellular_component | L-cysteine desulfurase complex |
F | 1990229 | cellular_component | iron-sulfur cluster assembly complex |
G | 0000035 | molecular_function | acyl binding |
G | 0000036 | molecular_function | acyl carrier activity |
G | 0005515 | molecular_function | protein binding |
G | 0005737 | cellular_component | cytoplasm |
G | 0005829 | cellular_component | cytosol |
G | 0006633 | biological_process | fatty acid biosynthetic process |
G | 0008289 | molecular_function | lipid binding |
G | 0008610 | biological_process | lipid biosynthetic process |
G | 0009245 | biological_process | lipid A biosynthetic process |
G | 0009410 | biological_process | response to xenobiotic stimulus |
G | 0031177 | molecular_function | phosphopantetheine binding |
H | 0005506 | molecular_function | iron ion binding |
H | 0016226 | biological_process | iron-sulfur cluster assembly |
H | 0051536 | molecular_function | iron-sulfur cluster binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 10 |
Details | binding site for residue PLP A 501 |
Chain | Residue |
A | GLY126 |
E | THR295 |
A | ALA127 |
A | THR128 |
A | HIS156 |
A | MET203 |
A | ASP232 |
A | ALA234 |
A | GLN235 |
A | HIS257 |
site_id | AC2 |
Number of Residues | 9 |
Details | binding site for residue 8Q1 C 301 |
Chain | Residue |
B | ARG6 |
B | LEU10 |
B | ILE36 |
B | ALA39 |
B | PHE40 |
B | ASN43 |
B | VAL46 |
B | LEU55 |
B | ILE66 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue ZN D 201 |
Chain | Residue |
A | CYS381 |
D | ASP46 |
D | CYS70 |
D | HIS112 |
site_id | AC4 |
Number of Residues | 10 |
Details | binding site for residue PLP E 501 |
Chain | Residue |
A | THR295 |
E | GLY126 |
E | ALA127 |
E | THR128 |
E | HIS156 |
E | ASN207 |
E | ASP232 |
E | ALA234 |
E | GLN235 |
E | HIS257 |
site_id | AC5 |
Number of Residues | 10 |
Details | binding site for residue 8Q1 G 301 |
Chain | Residue |
F | ARG6 |
F | LEU10 |
F | MET16 |
F | PHE40 |
F | ASN43 |
F | VAL46 |
F | LEU55 |
F | ALA59 |
F | ASP62 |
F | ILE66 |
site_id | AC6 |
Number of Residues | 4 |
Details | binding site for residue ZN H 201 |
Chain | Residue |
E | CYS381 |
H | ASP46 |
H | CYS70 |
H | HIS112 |
Functional Information from PROSITE/UniProt
site_id | PS00012 |
Number of Residues | 16 |
Details | PHOSPHOPANTETHEINE Phosphopantetheine attachment site. DLGADSLDTVELVMAL |
Chain | Residue | Details |
C | ASP31-LEU46 |
site_id | PS00595 |
Number of Residues | 20 |
Details | AA_TRANSFER_CLASS_5 Aminotransferases class-V pyridoxal-phosphate attachment site. IDLMsiSGHKiygpk.GvGaI |
Chain | Residue | Details |
A | ILE249-ILE268 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Cysteine persulfide intermediate => ECO:0000250|UniProtKB:Q9D7P6 |
Chain | Residue | Details |
D | CYS44 | |
H | CYS44 | |
F | ARG6 | |
F | LYS44 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | ACT_SITE: Cysteine persulfide intermediate => ECO:0000250|UniProtKB:O29689 |
Chain | Residue | Details |
D | CYS113 | |
H | CYS113 |
site_id | SWS_FT_FI3 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000269|PubMed:31101807, ECO:0007744|PDB:6NZU |
Chain | Residue | Details |
D | ASP46 | |
D | CYS70 | |
D | CYS113 | |
H | ASP46 | |
H | CYS70 | |
H | CYS113 | |
E | SER255 | |
E | HIS257 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | SITE: Mediates ISCU dimerization and de novo [2Fe-2S] cluster assembly => ECO:0000269|PubMed:34824239 |
Chain | Residue | Details |
D | GLY35 | |
H | GLY35 |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine; by MTOR => ECO:0000269|PubMed:23508953 |
Chain | Residue | Details |
D | VAL14 | |
H | VAL14 |
site_id | SWS_FT_FI6 |
Number of Residues | 2 |
Details | MOD_RES: Cysteine persulfide => ECO:0000250|UniProtKB:Q9D7P6 |
Chain | Residue | Details |
D | CYS44 | |
H | CYS44 |
site_id | SWS_FT_FI7 |
Number of Residues | 2 |
Details | MOD_RES: Cysteine persulfide => ECO:0000305|PubMed:24971490 |
Chain | Residue | Details |
D | CYS113 | |
H | CYS113 |