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5W5K

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with KV70

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
B0000118cellular_componenthistone deacetylase complex
B0004407molecular_functionhistone deacetylase activity
B0006325biological_processchromatin organization
B0016575biological_processhistone deacetylation
C0000118cellular_componenthistone deacetylase complex
C0004407molecular_functionhistone deacetylase activity
C0006325biological_processchromatin organization
C0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ZN A 801
ChainResidue
AASP612
AHIS614
AASP705
AK70804
AHOH921

site_idAC2
Number of Residues5
Detailsbinding site for residue K A 802
ChainResidue
ALEU634
AASP610
AASP612
AHIS614
ASER633

site_idAC3
Number of Residues6
Detailsbinding site for residue K A 803
ChainResidue
APHE623
AASP626
AVAL629
ATYR662
AHOH909
AHOH948

site_idAC4
Number of Residues19
Detailsbinding site for residue K70 A 804
ChainResidue
AHIS463
APRO464
ASER531
AHIS574
AGLY582
APHE583
AASP612
AHIS614
APHE643
AASP705
ALEU712
AGLY743
ATYR745
AZN801
AHOH921
BGLY439
BSER440
BSER441
BPRO442

site_idAC5
Number of Residues5
Detailsbinding site for residue ZN B 801
ChainResidue
BASP612
BHIS614
BASP705
BK70804
BHOH902

site_idAC6
Number of Residues5
Detailsbinding site for residue K B 802
ChainResidue
BASP610
BASP612
BHIS614
BSER633
BLEU634

site_idAC7
Number of Residues5
Detailsbinding site for residue K B 803
ChainResidue
BPHE623
BASP626
BVAL629
BTYR662
BHOH908

site_idAC8
Number of Residues19
Detailsbinding site for residue K70 B 804
ChainResidue
BHIS463
BPRO464
BSER531
BHIS574
BGLY582
BPHE583
BASP612
BHIS614
BPHE643
BASP705
BLEU712
BGLY743
BTYR745
BZN801
BHOH902
CGLY439
CSER440
CSER441
CPRO442

site_idAC9
Number of Residues5
Detailsbinding site for residue ZN C 801
ChainResidue
CASP612
CHIS614
CASP705
CK70804
CHOH906

site_idAD1
Number of Residues5
Detailsbinding site for residue K C 802
ChainResidue
CASP610
CASP612
CHIS614
CSER633
CLEU634

site_idAD2
Number of Residues5
Detailsbinding site for residue K C 803
ChainResidue
CPHE623
CASP626
CVAL629
CTYR662
CHOH902

site_idAD3
Number of Residues18
Detailsbinding site for residue K70 C 804
ChainResidue
CZN801
CHOH906
CHOH950
AGLY439
ASER440
ASER441
APRO442
CPRO464
CSER531
CGLY582
CPHE583
CASP612
CHIS614
CPHE643
CASP705
CLEU712
CGLY743
CTYR745

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PDB entries from 2024-08-28

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