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5VZT

Crystal structure of the Skp1-FBXO31 complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0000209biological_processprotein polyubiquitination
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005737cellular_componentcytoplasm
A0005813cellular_componentcentrosome
A0005829cellular_componentcytosol
A0006338biological_processchromatin remodeling
A0006511biological_processubiquitin-dependent protein catabolic process
A0006513biological_processprotein monoubiquitination
A0008013molecular_functionbeta-catenin binding
A0016567biological_processprotein ubiquitination
A0019005cellular_componentSCF ubiquitin ligase complex
A0019904molecular_functionprotein domain specific binding
A0031146biological_processSCF-dependent proteasomal ubiquitin-dependent protein catabolic process
A0031467cellular_componentCul7-RING ubiquitin ligase complex
A0031519cellular_componentPcG protein complex
A0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
A0051457biological_processmaintenance of protein location in nucleus
A0070936biological_processprotein K48-linked ubiquitination
A0097602molecular_functioncullin family protein binding
A0140677molecular_functionmolecular function activator activity
A0160072molecular_functionubiquitin ligase complex scaffold activity
A1904668biological_processpositive regulation of ubiquitin protein ligase activity
A1990444molecular_functionF-box domain binding
A1990756molecular_functionubiquitin-like ligase-substrate adaptor activity
C0000209biological_processprotein polyubiquitination
C0005515molecular_functionprotein binding
C0005634cellular_componentnucleus
C0005654cellular_componentnucleoplasm
C0005737cellular_componentcytoplasm
C0005813cellular_componentcentrosome
C0005829cellular_componentcytosol
C0006338biological_processchromatin remodeling
C0006511biological_processubiquitin-dependent protein catabolic process
C0006513biological_processprotein monoubiquitination
C0008013molecular_functionbeta-catenin binding
C0016567biological_processprotein ubiquitination
C0019005cellular_componentSCF ubiquitin ligase complex
C0019904molecular_functionprotein domain specific binding
C0031146biological_processSCF-dependent proteasomal ubiquitin-dependent protein catabolic process
C0031467cellular_componentCul7-RING ubiquitin ligase complex
C0031519cellular_componentPcG protein complex
C0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
C0051457biological_processmaintenance of protein location in nucleus
C0070936biological_processprotein K48-linked ubiquitination
C0097602molecular_functioncullin family protein binding
C0140677molecular_functionmolecular function activator activity
C0160072molecular_functionubiquitin ligase complex scaffold activity
C1904668biological_processpositive regulation of ubiquitin protein ligase activity
C1990444molecular_functionF-box domain binding
C1990756molecular_functionubiquitin-like ligase-substrate adaptor activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ZN B 601
ChainResidue
BCYS206
BTYR208
BHIS214
BCYS230
BHIS236

site_idAC2
Number of Residues10
Detailsbinding site for residue DTT B 602
ChainResidue
BILE337
BLEU472
BILE473
BALA474
BTRP500
BLEU503
BHIS312
BLYS330
BASP334
BASN336

site_idAC3
Number of Residues2
Detailsbinding site for residue PO4 B 603
ChainResidue
BASP528
BLEU531

site_idAC4
Number of Residues3
Detailsbinding site for residue PO4 B 604
ChainResidue
BARG242
BGLN279
DGLU268

site_idAC5
Number of Residues3
Detailsbinding site for residue PO4 B 605
ChainResidue
BARG242
BPHE246
DGLU268

site_idAC6
Number of Residues1
Detailsbinding site for residue PO4 B 606
ChainResidue
BILE170

site_idAC7
Number of Residues4
Detailsbinding site for residue ZN D 601
ChainResidue
DCYS206
DHIS214
DCYS230
DHIS236

site_idAC8
Number of Residues8
Detailsbinding site for residue DTT D 602
ChainResidue
DTYR309
DHIS312
DLYS330
DASP334
DILE337
DILE473
DALA474
DTRP500

site_idAC9
Number of Residues3
Detailsbinding site for residue PO4 D 603
ChainResidue
BLEU271
DGLN243
DLEU271

site_idAD1
Number of Residues4
Detailsbinding site for residue PO4 D 604
ChainResidue
CASP1033
DHIS195
DMET197
DTHR203

site_idAD2
Number of Residues3
Detailsbinding site for residue PO4 D 605
ChainResidue
DPHE168
DILE170
DARG193

site_idAD3
Number of Residues2
Detailsbinding site for residue PO4 D 606
ChainResidue
BGLU268
DARG242

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: Phosphoserine; by ATM => ECO:0000269|PubMed:19412162
ChainResidueDetails
BSER278
DSER278

site_idSWS_FT_FI2
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1) => ECO:0007744|PubMed:25114211
ChainResidueDetails
AGLU1156
CGLU1156

219140

PDB entries from 2024-05-01

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