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5VSC

Structure of human G9a SET-domain (EHMT2) in complex with inhibitor 13

Functional Information from GO Data
ChainGOidnamespacecontents
A0002039molecular_functionp53 binding
A0005634cellular_componentnucleus
A0008270molecular_functionzinc ion binding
A0016279molecular_functionprotein-lysine N-methyltransferase activity
A0042054molecular_functionhistone methyltransferase activity
B0002039molecular_functionp53 binding
B0005634cellular_componentnucleus
B0008270molecular_functionzinc ion binding
B0016279molecular_functionprotein-lysine N-methyltransferase activity
B0042054molecular_functionhistone methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 1501
ChainResidue
ACYS980
ACYS1017
ACYS1023
ACYS1027

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 1502
ChainResidue
ACYS974
ACYS987
ACYS1017
ACYS1021

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN A 1503
ChainResidue
ACYS976
ACYS980
ACYS985
ACYS974

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN A 1504
ChainResidue
ACYS1115
ACYS1168
ACYS1170
ACYS1175

site_idAC5
Number of Residues18
Detailsbinding site for residue SAM A 1505
ChainResidue
AMET1048
ATRP1050
ASER1084
ATYR1085
AARG1109
APHE1110
AASN1112
AHIS1113
ATYR1154
APHE1166
ATHR1167
ACYS1168
AGLN1169
AHOH1627
AHOH1634
AHOH1696
AHOH1723
AHOH1731

site_idAC6
Number of Residues10
Detailsbinding site for residue 9HJ A 1506
ChainResidue
AALA1077
AASP1078
AARG1080
AASP1083
ALEU1086
AASP1088
ACYS1098
AARG1157
APHE1158
AILE1161

site_idAC7
Number of Residues4
Detailsbinding site for residue ZN B 1501
ChainResidue
BCYS980
BCYS1017
BCYS1023
BCYS1027

site_idAC8
Number of Residues4
Detailsbinding site for residue ZN B 1502
ChainResidue
BCYS974
BCYS987
BCYS1017
BCYS1021

site_idAC9
Number of Residues4
Detailsbinding site for residue ZN B 1503
ChainResidue
BCYS974
BCYS976
BCYS980
BCYS985

site_idAD1
Number of Residues4
Detailsbinding site for residue ZN B 1504
ChainResidue
BCYS1115
BCYS1168
BCYS1170
BCYS1175

site_idAD2
Number of Residues20
Detailsbinding site for residue SAM B 1505
ChainResidue
BMET1048
BTRP1050
BSER1084
BTYR1085
BARG1109
BPHE1110
BASN1112
BHIS1113
BTYR1154
BPHE1158
BPHE1166
BTHR1167
BCYS1168
BGLN1169
BHOH1634
BHOH1659
BHOH1667
BHOH1722
BHOH1737
BHOH1771

site_idAD3
Number of Residues12
Detailsbinding site for residue 9HJ B 1506
ChainResidue
BASP1074
BALA1077
BASP1078
BARG1080
BASP1083
BLEU1086
BASP1088
BVAL1096
BTYR1097
BCYS1098
BARG1157
BPHE1158

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues126
DetailsDomain: {"description":"Pre-SET","evidences":[{"source":"PROSITE-ProRule","id":"PRU00157","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues32
DetailsDomain: {"description":"Post-SET"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues6
DetailsRegion: {"description":"Interaction with histone H3","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues36
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsSite: {"description":"Histone H3K9me binding","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

243911

PDB entries from 2025-10-29

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