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5VSC

Structure of human G9a SET-domain (EHMT2) in complex with inhibitor 13

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyPIXEL
Collection date2017-03-28
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9792
Spacegroup nameP 1 21 1
Unit cell lengths56.440, 78.430, 73.060
Unit cell angles90.00, 90.96, 90.00
Refinement procedure
Resolution39.048 - 1.400
R-factor0.1658
Rwork0.165
R-free0.18170
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3k5k
RMSD bond length0.006
RMSD bond angle1.056
Data scaling softwareSCALA (3.3.22)
Phasing softwarePHASER
Refinement softwarePHENIX (1.11.1_2575)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]73.05039.0481.480
High resolution limit [Å]1.4004.4301.400
Rmerge0.0480.408
Rmeas0.0670.0520.448
Rpim0.0260.0200.182
Total number of observations779510
Number of reflections119728
<I/σ(I)>12.411.61.8
Completeness [%]95.994.984.7
Redundancy6.56.65.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION7.529020 % PEG3350, 10% glycerol, 0.2 M Sodium bromide

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