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5UM3

Crystal structure of the V122L mutant of human UBR-box domain from UBR2

Functional Information from GO Data
ChainGOidnamespacecontents
A0008270molecular_functionzinc ion binding
A0061630molecular_functionubiquitin protein ligase activity
A0071596biological_processubiquitin-dependent protein catabolic process via the N-end rule pathway
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 201
ChainResidue
ACYS99
ACYS124
ACYS127
ACYS149

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 202
ChainResidue
ACYS127
ACYS151
ACYS163
AHIS166

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN A 203
ChainResidue
ACYS115
AHIS133
AHIS136
ACYS112

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues11
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20835242","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28392261","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3NY2","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3NY3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TDA","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TDB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TDD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5UM3","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20835242","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28392261","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3NY3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TDA","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20835242","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28392261","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3NY3","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues3
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"38225265","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

238582

PDB entries from 2025-07-09

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