5U4J

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Functional Information from GO Data

Chain	GOid	namespace	contents
c	0000028	biological_process	ribosomal small subunit assembly
c	0002181	biological_process	cytoplasmic translation
c	0003676	molecular_function	nucleic acid binding
c	0003723	molecular_function	RNA binding
c	0003729	molecular_function	mRNA binding
c	0003735	molecular_function	structural constituent of ribosome
c	0005737	cellular_component	cytoplasm
c	0005829	cellular_component	cytosol
c	0005840	cellular_component	ribosome
c	0006412	biological_process	translation
c	0019843	molecular_function	rRNA binding
c	0022627	cellular_component	cytosolic small ribosomal subunit
c	1990904	cellular_component	ribonucleoprotein complex
d	0000028	biological_process	ribosomal small subunit assembly
d	0000900	molecular_function	mRNA regulatory element binding translation repressor activity
d	0002181	biological_process	cytoplasmic translation
d	0003723	molecular_function	RNA binding
d	0003735	molecular_function	structural constituent of ribosome
d	0005515	molecular_function	protein binding
d	0005737	cellular_component	cytoplasm
d	0005829	cellular_component	cytosol
d	0005840	cellular_component	ribosome
d	0006351	biological_process	DNA-templated transcription
d	0006353	biological_process	DNA-templated transcription termination
d	0006412	biological_process	translation
d	0006417	biological_process	regulation of translation
d	0015935	cellular_component	small ribosomal subunit
d	0019843	molecular_function	rRNA binding
d	0022627	cellular_component	cytosolic small ribosomal subunit
d	0031564	biological_process	transcription antitermination
d	0042254	biological_process	ribosome biogenesis
d	0042274	biological_process	ribosomal small subunit biogenesis
d	0045947	biological_process	negative regulation of translational initiation
d	0046677	biological_process	response to antibiotic
d	0048027	molecular_function	mRNA 5'-UTR binding
d	1990145	biological_process	maintenance of translational fidelity
d	1990904	cellular_component	ribonucleoprotein complex
e	0000028	biological_process	ribosomal small subunit assembly
e	0002181	biological_process	cytoplasmic translation
e	0003723	molecular_function	RNA binding
e	0003735	molecular_function	structural constituent of ribosome
e	0005515	molecular_function	protein binding
e	0005737	cellular_component	cytoplasm
e	0005829	cellular_component	cytosol
e	0005840	cellular_component	ribosome
e	0006412	biological_process	translation
e	0015935	cellular_component	small ribosomal subunit
e	0019843	molecular_function	rRNA binding
e	0022627	cellular_component	cytosolic small ribosomal subunit
e	0042254	biological_process	ribosome biogenesis
e	0046677	biological_process	response to antibiotic
e	1990145	biological_process	maintenance of translational fidelity
e	1990904	cellular_component	ribonucleoprotein complex
l	0000049	molecular_function	tRNA binding
l	0000372	biological_process	Group I intron splicing
l	0002181	biological_process	cytoplasmic translation
l	0003723	molecular_function	RNA binding
l	0003735	molecular_function	structural constituent of ribosome
l	0005515	molecular_function	protein binding
l	0005737	cellular_component	cytoplasm
l	0005829	cellular_component	cytosol
l	0005840	cellular_component	ribosome
l	0006412	biological_process	translation
l	0015935	cellular_component	small ribosomal subunit
l	0019843	molecular_function	rRNA binding
l	0022627	cellular_component	cytosolic small ribosomal subunit
l	0033120	biological_process	positive regulation of RNA splicing
l	0034336	molecular_function	misfolded RNA binding
l	0034337	biological_process	RNA folding
l	0046677	biological_process	response to antibiotic
l	1990145	biological_process	maintenance of translational fidelity
l	1990904	cellular_component	ribonucleoprotein complex
v	0003747	molecular_function	translation release factor activity
v	0005737	cellular_component	cytoplasm
v	0005829	cellular_component	cytosol
v	0006412	biological_process	translation
v	0006415	biological_process	translational termination
v	0016149	molecular_function	translation release factor activity, codon specific
v	0075523	biological_process	viral translational frameshifting
w	0072344	biological_process	rescue of stalled ribosome

Functional Information from PROSITE/UniProt

site_id	PS00055
Number of Residues	8
Details	RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR

Chain	Residue	Details
l	LYS43-ARG50

---

site_id	PS00548
Number of Residues	35
Details	RIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewyreGrVplHt..LradIDyntseahTtyGviG

Chain	Residue	Details
c	ALA163-GLY197

---

site_id	PS00585
Number of Residues	33
Details	RIBOSOMAL_S5 Ribosomal protein S5 signature. GRifsFtAltVVGDgn.GrVGfGygkar.EVpa.AI

Chain	Residue	Details
e	GLY28-ILE60

---

site_id	PS00632
Number of Residues	25
Details	RIBOSOMAL_S4 Ribosomal protein S4 signature. LEgRLdnvVYRmgfGaTraeARqLV

Chain	Residue	Details
d	LEU94-VAL118

---

site_id	PS00745
Number of Residues	17
Details	RF_PROK_I Prokaryotic-type class I peptide chain release factors signature. RTsGaGGQHVNrteSAV

Chain	Residue	Details
v	ARG245-VAL261

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	63
Details	Domain: {"description":"S5 DRBM"}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	1
Details	Modified residue: {"description":"3-methylthioaspartic acid","evidences":[{"source":"PubMed","id":"8844851","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	1
Details	Modified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"18723842","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	14
Details	Compositional bias: {"description":"Basic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

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