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5TC4

Crystal structure of human mitochondrial methylenetetrahydrofolate dehydrogenase-cyclohydrolase (MTHFD2) in complex with LY345899 and cofactors

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003824molecular_functioncatalytic activity
A0004477molecular_functionmethenyltetrahydrofolate cyclohydrolase activity
A0004487molecular_functionmethylenetetrahydrofolate dehydrogenase (NAD+) activity
A0004488molecular_functionmethylenetetrahydrofolate dehydrogenase (NADP+) activity
A0005515molecular_functionprotein binding
A0005615cellular_componentextracellular space
A0005739cellular_componentmitochondrion
A0005759cellular_componentmitochondrial matrix
A0006730biological_processone-carbon metabolic process
A0015943biological_processformate biosynthetic process
A0016491molecular_functionoxidoreductase activity
A0016787molecular_functionhydrolase activity
A0035999biological_processtetrahydrofolate interconversion
A0042301molecular_functionphosphate ion binding
A0046653biological_processtetrahydrofolate metabolic process
A0046655biological_processfolic acid metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues25
Detailsbinding site for residue NAD A 401
ChainResidue
ATHR176
AALA254
AGLY255
AILE256
AVAL274
AGLY275
AILE276
AGLY313
ATHR316
APO4403
AHOH537
AGLY200
AHOH544
AHOH560
AHOH567
AHOH592
AHOH622
AHOH629
AARG201
ASER202
AASN204
AVAL205
AHIS232
AARG233
AALA253

site_idAC2
Number of Residues21
Detailsbinding site for residue L34 A 402
ChainResidue
ATYR84
AASN87
ALYS88
AVAL131
AGLN132
ALEU133
AASP155
APHE157
AILE276
AARG278
ALEU289
APRO309
AGLY310
APRO314
AHOH501
AHOH515
AHOH521
AHOH522
AHOH530
AHOH538
AHOH561

site_idAC3
Number of Residues5
Detailsbinding site for residue PO4 A 403
ChainResidue
AARG201
AARG233
ANAD401
AHOH537
AHOH563

Functional Information from PROSITE/UniProt
site_idPS00766
Number of Residues26
DetailsTHF_DHG_CYH_1 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. EeELLnlInkLNnDdnvdgLLVQLPL
ChainResidueDetails
AGLU110-LEU135

site_idPS00767
Number of Residues9
DetailsTHF_DHG_CYH_2 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. PGGVGPMTV
ChainResidueDetails
APRO309-VAL317

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues10
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"27899380","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"16100107","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27899380","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine; alternate","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate","evidences":[{"source":"PubMed","id":"28112733","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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