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5T9J

Crystal Structure of human GEN1 in complex with Holliday junction DNA in the upper interface

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003824molecular_functioncatalytic activity
A0004518molecular_functionnuclease activity
B0003677molecular_functionDNA binding
B0003824molecular_functioncatalytic activity
B0004518molecular_functionnuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue GOL A 601
ChainResidue
AARG115
AHIS119
AGLU122
AGOL604

site_idAC2
Number of Residues2
Detailsbinding site for residue GOL A 602
ChainResidue
APRO127
ATRP128

site_idAC3
Number of Residues3
Detailsbinding site for residue GOL A 604
ChainResidue
AARG115
AGLN130
AGOL601

site_idAC4
Number of Residues3
Detailsbinding site for residue GOL A 605
ChainResidue
ATHR64
ALYS69
ATYR382

site_idAC5
Number of Residues2
Detailsbinding site for residue GOL A 606
ChainResidue
AGLY146
AASP149

site_idAC6
Number of Residues3
Detailsbinding site for residue GOL A 607
ChainResidue
ALYS374
CDG3
CDC4

site_idAC7
Number of Residues2
Detailsbinding site for residue MG A 608
ChainResidue
AGLU75
AGLU134

site_idAC8
Number of Residues3
Detailsbinding site for residue GOL B 601
ChainResidue
BARG115
BHIS119
BGLU122

site_idAC9
Number of Residues4
Detailsbinding site for residue GOL B 602
ChainResidue
BPRO127
BTRP128
BLYS344
BARG347

site_idAD1
Number of Residues4
Detailsbinding site for residue GOL B 603
ChainResidue
BARG347
BTYR348
BTYR382
BGLU386

site_idAD2
Number of Residues3
Detailsbinding site for residue GOL B 604
ChainResidue
BTHR26
BGLY146
BASP149

site_idAD3
Number of Residues4
Detailsbinding site for residue GOL B 605
ChainResidue
ALYS50
AHIS109
ASER112
BARG401

site_idAD4
Number of Residues3
Detailsbinding site for residue MG B 606
ChainResidue
BGLU75
BGLU134
BALA135

site_idAD5
Number of Residues3
Detailsbinding site for residue GOL C 101
ChainResidue
ATYR62
AMET172
CDG3

site_idAD6
Number of Residues3
Detailsbinding site for residue GOL C 102
ChainResidue
CDT11
EDA10
FDG9

site_idAD7
Number of Residues3
Detailsbinding site for residue GOL C 103
ChainResidue
CDG10
EDA10
EDG11

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues172
DetailsRegion: {"description":"XPG-I domain","evidences":[{"source":"PubMed","id":"26682650","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues148
DetailsRegion: {"description":"Chromodomain","evidences":[{"source":"PubMed","id":"26682650","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues10
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"26682650","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5T9J","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

247947

PDB entries from 2026-01-21

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