5SYM
Cocrystal structure of the human acyl protein thioesterase 1 with an isoform-selective inhibitor, ML348
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0002084 | biological_process | protein depalmitoylation |
A | 0004620 | molecular_function | phospholipase activity |
A | 0004622 | molecular_function | lysophospholipase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005634 | cellular_component | nucleus |
A | 0005654 | cellular_component | nucleoplasm |
A | 0005737 | cellular_component | cytoplasm |
A | 0005783 | cellular_component | endoplasmic reticulum |
A | 0005829 | cellular_component | cytosol |
A | 0005886 | cellular_component | plasma membrane |
A | 0006631 | biological_process | fatty acid metabolic process |
A | 0008474 | molecular_function | palmitoyl-(protein) hydrolase activity |
A | 0015908 | biological_process | fatty acid transport |
A | 0016298 | molecular_function | lipase activity |
A | 0016787 | molecular_function | hydrolase activity |
A | 0031965 | cellular_component | nuclear membrane |
A | 0042997 | biological_process | negative regulation of Golgi to plasma membrane protein transport |
A | 0052689 | molecular_function | carboxylic ester hydrolase activity |
A | 0070062 | cellular_component | extracellular exosome |
A | 1905336 | biological_process | negative regulation of aggrephagy |
B | 0002084 | biological_process | protein depalmitoylation |
B | 0004620 | molecular_function | phospholipase activity |
B | 0004622 | molecular_function | lysophospholipase activity |
B | 0005515 | molecular_function | protein binding |
B | 0005634 | cellular_component | nucleus |
B | 0005654 | cellular_component | nucleoplasm |
B | 0005737 | cellular_component | cytoplasm |
B | 0005783 | cellular_component | endoplasmic reticulum |
B | 0005829 | cellular_component | cytosol |
B | 0005886 | cellular_component | plasma membrane |
B | 0006631 | biological_process | fatty acid metabolic process |
B | 0008474 | molecular_function | palmitoyl-(protein) hydrolase activity |
B | 0015908 | biological_process | fatty acid transport |
B | 0016298 | molecular_function | lipase activity |
B | 0016787 | molecular_function | hydrolase activity |
B | 0031965 | cellular_component | nuclear membrane |
B | 0042997 | biological_process | negative regulation of Golgi to plasma membrane protein transport |
B | 0052689 | molecular_function | carboxylic ester hydrolase activity |
B | 0070062 | cellular_component | extracellular exosome |
B | 1905336 | biological_process | negative regulation of aggrephagy |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 15 |
Details | binding site for residue 71Q A 301 |
Chain | Residue |
A | ILE75 |
A | VAL177 |
A | PHE181 |
A | THR185 |
A | CL308 |
A | HOH431 |
A | HOH456 |
A | GLY77 |
A | LEU78 |
A | SER79 |
A | PRO80 |
A | TRP145 |
A | LEU146 |
A | ARG149 |
A | LEU176 |
site_id | AC2 |
Number of Residues | 4 |
Details | binding site for residue EDO A 302 |
Chain | Residue |
A | GLY36 |
A | TRP37 |
A | SER210 |
B | MET65 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue EDO A 303 |
Chain | Residue |
A | SER210 |
A | CYS211 |
A | MET215 |
A | HOH531 |
site_id | AC4 |
Number of Residues | 8 |
Details | binding site for residue EDO A 304 |
Chain | Residue |
A | LYS97 |
A | THR131 |
A | THR132 |
A | GLN133 |
A | HOH403 |
A | HOH423 |
B | GLU204 |
B | GLN213 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue EDO A 305 |
Chain | Residue |
A | LYS19 |
A | ALA20 |
A | ASN106 |
A | CL307 |
A | HOH428 |
B | ARG45 |
site_id | AC6 |
Number of Residues | 3 |
Details | binding site for residue EDO A 306 |
Chain | Residue |
A | GLN83 |
A | GLU84 |
A | HOH459 |
site_id | AC7 |
Number of Residues | 4 |
Details | binding site for residue CL A 307 |
Chain | Residue |
A | ALA20 |
A | EDO305 |
B | ARG45 |
B | HOH547 |
site_id | AC8 |
Number of Residues | 5 |
Details | binding site for residue CL A 308 |
Chain | Residue |
A | LEU30 |
A | SER119 |
A | GLN120 |
A | 71Q301 |
B | HOH414 |
site_id | AC9 |
Number of Residues | 4 |
Details | binding site for residue CL A 309 |
Chain | Residue |
A | ARG18 |
A | THR21 |
A | PRO228 |
A | ILE229 |
site_id | AD1 |
Number of Residues | 5 |
Details | binding site for residue EDO A 310 |
Chain | Residue |
A | MET65 |
A | HOH466 |
B | GLY36 |
B | TRP37 |
B | SER210 |
site_id | AD2 |
Number of Residues | 16 |
Details | binding site for residue 71Q B 301 |
Chain | Residue |
B | LEU30 |
B | ILE75 |
B | GLY77 |
B | LEU78 |
B | SER79 |
B | PRO80 |
B | TRP145 |
B | LEU146 |
B | ARG149 |
B | LEU176 |
B | VAL177 |
B | PHE181 |
B | THR185 |
B | CL303 |
B | HOH408 |
B | HOH411 |
site_id | AD3 |
Number of Residues | 7 |
Details | binding site for residue EDO B 302 |
Chain | Residue |
A | ASN66 |
A | GLY159 |
B | MET207 |
B | SER209 |
B | HOH417 |
B | HOH426 |
B | HOH450 |
site_id | AD4 |
Number of Residues | 5 |
Details | binding site for residue CL B 303 |
Chain | Residue |
A | HOH420 |
B | LEU30 |
B | SER119 |
B | GLN120 |
B | 71Q301 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Charge relay system => ECO:0000269|PubMed:19439193, ECO:0000269|PubMed:37802024 |
Chain | Residue | Details |
A | SER119 | |
B | SER119 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | ACT_SITE: Charge relay system => ECO:0000305|PubMed:11080636 |
Chain | Residue | Details |
A | ASP174 | |
A | HIS208 | |
B | ASP174 | |
B | HIS208 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | MOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P97823 |
Chain | Residue | Details |
A | LYS224 | |
B | LYS224 |