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5OY7

Structure of the 4_601_157 tetranucleosome (P1 form)

Functional Information from GO Data
ChainGOidnamespacecontents
a0000786cellular_componentnucleosome
a0003677molecular_functionDNA binding
a0005634cellular_componentnucleus
a0005694cellular_componentchromosome
a0030527molecular_functionstructural constituent of chromatin
a0046982molecular_functionprotein heterodimerization activity
A0000786cellular_componentnucleosome
A0003677molecular_functionDNA binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005694cellular_componentchromosome
A0030527molecular_functionstructural constituent of chromatin
A0046982molecular_functionprotein heterodimerization activity
b0000786cellular_componentnucleosome
b0003677molecular_functionDNA binding
b0005515molecular_functionprotein binding
b0005634cellular_componentnucleus
b0005694cellular_componentchromosome
b0030527molecular_functionstructural constituent of chromatin
b0046982molecular_functionprotein heterodimerization activity
B0000786cellular_componentnucleosome
B0003677molecular_functionDNA binding
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005694cellular_componentchromosome
B0006334biological_processnucleosome assembly
B0030527molecular_functionstructural constituent of chromatin
B0046982molecular_functionprotein heterodimerization activity
c0000786cellular_componentnucleosome
c0003677molecular_functionDNA binding
c0005515molecular_functionprotein binding
c0005634cellular_componentnucleus
c0005654cellular_componentnucleoplasm
c0005694cellular_componentchromosome
c0030527molecular_functionstructural constituent of chromatin
c0046982molecular_functionprotein heterodimerization activity
C0000786cellular_componentnucleosome
C0003677molecular_functionDNA binding
C0005634cellular_componentnucleus
C0005694cellular_componentchromosome
C0030527molecular_functionstructural constituent of chromatin
C0046982molecular_functionprotein heterodimerization activity
d0000786cellular_componentnucleosome
d0003677molecular_functionDNA binding
d0005515molecular_functionprotein binding
d0005634cellular_componentnucleus
d0005694cellular_componentchromosome
d0006334biological_processnucleosome assembly
d0030527molecular_functionstructural constituent of chromatin
d0046982molecular_functionprotein heterodimerization activity
D0000786cellular_componentnucleosome
D0003677molecular_functionDNA binding
D0005515molecular_functionprotein binding
D0005634cellular_componentnucleus
D0005694cellular_componentchromosome
D0030527molecular_functionstructural constituent of chromatin
D0046982molecular_functionprotein heterodimerization activity
e0000786cellular_componentnucleosome
e0003677molecular_functionDNA binding
e0005634cellular_componentnucleus
e0005694cellular_componentchromosome
e0030527molecular_functionstructural constituent of chromatin
e0046982molecular_functionprotein heterodimerization activity
E0000786cellular_componentnucleosome
E0003677molecular_functionDNA binding
E0005515molecular_functionprotein binding
E0005634cellular_componentnucleus
E0005654cellular_componentnucleoplasm
E0005694cellular_componentchromosome
E0030527molecular_functionstructural constituent of chromatin
E0046982molecular_functionprotein heterodimerization activity
f0000786cellular_componentnucleosome
f0003677molecular_functionDNA binding
f0005515molecular_functionprotein binding
f0005634cellular_componentnucleus
f0005694cellular_componentchromosome
f0030527molecular_functionstructural constituent of chromatin
f0046982molecular_functionprotein heterodimerization activity
F0000786cellular_componentnucleosome
F0003677molecular_functionDNA binding
F0005515molecular_functionprotein binding
F0005634cellular_componentnucleus
F0005694cellular_componentchromosome
F0006334biological_processnucleosome assembly
F0030527molecular_functionstructural constituent of chromatin
F0046982molecular_functionprotein heterodimerization activity
G0000786cellular_componentnucleosome
G0003677molecular_functionDNA binding
G0005634cellular_componentnucleus
G0005694cellular_componentchromosome
G0030527molecular_functionstructural constituent of chromatin
G0046982molecular_functionprotein heterodimerization activity
H0000786cellular_componentnucleosome
H0003677molecular_functionDNA binding
H0005515molecular_functionprotein binding
H0005634cellular_componentnucleus
H0005694cellular_componentchromosome
H0030527molecular_functionstructural constituent of chromatin
H0046982molecular_functionprotein heterodimerization activity
I0000786cellular_componentnucleosome
I0003677molecular_functionDNA binding
I0005515molecular_functionprotein binding
I0005634cellular_componentnucleus
I0005654cellular_componentnucleoplasm
I0005694cellular_componentchromosome
I0030527molecular_functionstructural constituent of chromatin
I0046982molecular_functionprotein heterodimerization activity
J0000786cellular_componentnucleosome
J0003677molecular_functionDNA binding
J0005515molecular_functionprotein binding
J0005634cellular_componentnucleus
J0005694cellular_componentchromosome
J0006334biological_processnucleosome assembly
J0030527molecular_functionstructural constituent of chromatin
J0046982molecular_functionprotein heterodimerization activity
K0000786cellular_componentnucleosome
K0003677molecular_functionDNA binding
K0005634cellular_componentnucleus
K0005694cellular_componentchromosome
K0030527molecular_functionstructural constituent of chromatin
K0046982molecular_functionprotein heterodimerization activity
L0000786cellular_componentnucleosome
L0003677molecular_functionDNA binding
L0005515molecular_functionprotein binding
L0005634cellular_componentnucleus
L0005694cellular_componentchromosome
L0030527molecular_functionstructural constituent of chromatin
L0046982molecular_functionprotein heterodimerization activity
M0000786cellular_componentnucleosome
M0003677molecular_functionDNA binding
M0005515molecular_functionprotein binding
M0005634cellular_componentnucleus
M0005654cellular_componentnucleoplasm
M0005694cellular_componentchromosome
M0030527molecular_functionstructural constituent of chromatin
M0046982molecular_functionprotein heterodimerization activity
N0000786cellular_componentnucleosome
N0003677molecular_functionDNA binding
N0005515molecular_functionprotein binding
N0005634cellular_componentnucleus
N0005694cellular_componentchromosome
N0006334biological_processnucleosome assembly
N0030527molecular_functionstructural constituent of chromatin
N0046982molecular_functionprotein heterodimerization activity
O0000786cellular_componentnucleosome
O0003677molecular_functionDNA binding
O0005634cellular_componentnucleus
O0005694cellular_componentchromosome
O0030527molecular_functionstructural constituent of chromatin
O0046982molecular_functionprotein heterodimerization activity
P0000786cellular_componentnucleosome
P0003677molecular_functionDNA binding
P0005515molecular_functionprotein binding
P0005634cellular_componentnucleus
P0005694cellular_componentchromosome
P0030527molecular_functionstructural constituent of chromatin
P0046982molecular_functionprotein heterodimerization activity
Q0000786cellular_componentnucleosome
Q0003677molecular_functionDNA binding
Q0005515molecular_functionprotein binding
Q0005634cellular_componentnucleus
Q0005654cellular_componentnucleoplasm
Q0005694cellular_componentchromosome
Q0030527molecular_functionstructural constituent of chromatin
Q0046982molecular_functionprotein heterodimerization activity
R0000786cellular_componentnucleosome
R0003677molecular_functionDNA binding
R0005515molecular_functionprotein binding
R0005634cellular_componentnucleus
R0005694cellular_componentchromosome
R0006334biological_processnucleosome assembly
R0030527molecular_functionstructural constituent of chromatin
R0046982molecular_functionprotein heterodimerization activity
S0000786cellular_componentnucleosome
S0003677molecular_functionDNA binding
S0005634cellular_componentnucleus
S0005694cellular_componentchromosome
S0030527molecular_functionstructural constituent of chromatin
S0046982molecular_functionprotein heterodimerization activity
T0000786cellular_componentnucleosome
T0003677molecular_functionDNA binding
T0005515molecular_functionprotein binding
T0005634cellular_componentnucleus
T0005694cellular_componentchromosome
T0030527molecular_functionstructural constituent of chromatin
T0046982molecular_functionprotein heterodimerization activity
U0000786cellular_componentnucleosome
U0003677molecular_functionDNA binding
U0005515molecular_functionprotein binding
U0005634cellular_componentnucleus
U0005654cellular_componentnucleoplasm
U0005694cellular_componentchromosome
U0030527molecular_functionstructural constituent of chromatin
U0046982molecular_functionprotein heterodimerization activity
V0000786cellular_componentnucleosome
V0003677molecular_functionDNA binding
V0005515molecular_functionprotein binding
V0005634cellular_componentnucleus
V0005694cellular_componentchromosome
V0006334biological_processnucleosome assembly
V0030527molecular_functionstructural constituent of chromatin
V0046982molecular_functionprotein heterodimerization activity
W0000786cellular_componentnucleosome
W0003677molecular_functionDNA binding
W0005634cellular_componentnucleus
W0005694cellular_componentchromosome
W0030527molecular_functionstructural constituent of chromatin
W0046982molecular_functionprotein heterodimerization activity
X0000786cellular_componentnucleosome
X0003677molecular_functionDNA binding
X0005515molecular_functionprotein binding
X0005634cellular_componentnucleus
X0005694cellular_componentchromosome
X0030527molecular_functionstructural constituent of chromatin
X0046982molecular_functionprotein heterodimerization activity
Y0000786cellular_componentnucleosome
Y0003677molecular_functionDNA binding
Y0005515molecular_functionprotein binding
Y0005634cellular_componentnucleus
Y0005654cellular_componentnucleoplasm
Y0005694cellular_componentchromosome
Y0030527molecular_functionstructural constituent of chromatin
Y0046982molecular_functionprotein heterodimerization activity
Z0000786cellular_componentnucleosome
Z0003677molecular_functionDNA binding
Z0005515molecular_functionprotein binding
Z0005634cellular_componentnucleus
Z0005694cellular_componentchromosome
Z0006334biological_processnucleosome assembly
Z0030527molecular_functionstructural constituent of chromatin
Z0046982molecular_functionprotein heterodimerization activity
Functional Information from PDB Data
site_idAC1
Number of Residues25
Detailsbinding site for Di-peptide ASP D 48 and HIS H 106
ChainResidue
CTYR57
DVAL108
DSER109
DGLU110
GTYR57
GTYR57
HHIS46
HPRO47
HTHR49
HGLU102
HLEU103
CTYR57
HALA104
HLYS105
HALA107
HVAL108
HSER109
HGLU110
DHIS46
DPRO47
DTHR49
DGLU102
DALA104
DLYS105
DALA107

site_idAC2
Number of Residues25
Detailsbinding site for Di-peptide ASP D 48 and HIS H 106
ChainResidue
CTYR57
CTYR57
DHIS46
DPRO47
DTHR49
DGLU102
DALA104
DLYS105
DALA107
DVAL108
DSER109
DGLU110
GTYR57
GTYR57
HHIS46
HPRO47
HTHR49
HGLU102
HLEU103
HALA104
HLYS105
HALA107
HVAL108
HSER109
HGLU110

site_idAC3
Number of Residues25
Detailsbinding site for Di-peptide ASP D 48 and HIS H 106
ChainResidue
CTYR57
CTYR57
DHIS46
DPRO47
DTHR49
DGLU102
DALA104
DLYS105
DALA107
DVAL108
DSER109
DGLU110
GTYR57
GTYR57
HHIS46
HPRO47
HTHR49
HGLU102
HLEU103
HALA104
HLYS105
HALA107
HVAL108
HSER109
HGLU110

site_idAC4
Number of Residues25
Detailsbinding site for Di-peptide ASP T 48 and HIS X 106
ChainResidue
XGLU110
STYR57
STYR57
THIS46
TPRO47
TTHR49
TGLU102
TALA104
TLYS105
TALA107
TVAL108
TSER109
TGLU110
WTYR57
WTYR57
XHIS46
XPRO47
XTHR49
XGLU102
XLEU103
XALA104
XLYS105
XALA107
XVAL108
XSER109

site_idAC5
Number of Residues25
Detailsbinding site for Di-peptide ASP T 48 and HIS X 106
ChainResidue
STYR57
STYR57
THIS46
TPRO47
TTHR49
TGLU102
TALA104
TLYS105
TALA107
TVAL108
TSER109
TGLU110
WTYR57
WTYR57
XHIS46
XPRO47
XTHR49
XGLU102
XLEU103
XALA104
XLYS105
XALA107
XVAL108
XSER109
XGLU110

site_idAC6
Number of Residues5
Detailsbinding site for Di-nucleotide DG g 151 and DA h -150
ChainResidue
gDT150
gDT152
hDC-151
hDG-149
hDA-152

site_idAC7
Number of Residues5
Detailsbinding site for Di-nucleotide DG g 151 and DA h -150
ChainResidue
gDT150
gDT152
hDC-151
hDG-149
hDA-152

site_idAC8
Number of Residues5
Detailsbinding site for Di-nucleotide DG g 151 and DA h -150
ChainResidue
gDT150
gDT152
hDC-151
hDG-149
hDA-152

Functional Information from PROSITE/UniProt
site_idPS00046
Number of Residues7
DetailsHISTONE_H2A Histone H2A signature. AGLqFPV
ChainResidueDetails
aALA21-VAL27

site_idPS00047
Number of Residues5
DetailsHISTONE_H4 Histone H4 signature. GAKRH
ChainResidueDetails
NGLY14-HIS18

site_idPS00322
Number of Residues7
DetailsHISTONE_H3_1 Histone H3 signature 1. KAPRKQL
ChainResidueDetails
MLYS14-LEU20

site_idPS00357
Number of Residues23
DetailsHISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG
ChainResidueDetails
LARG89-GLY111

site_idPS00959
Number of Residues9
DetailsHISTONE_H3_2 Histone H3 signature 2. PFqRLVREI
ChainResidueDetails
MPRO66-ILE74

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsMOD_RES: Citrulline; alternate => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
MARG2
EARG17
UARG2
UARG17
YARG2
YARG17
cARG2
cARG17
TLYS2
TLYS9
TLYS12
MARG17
TLYS17
XLYS2
XLYS9
XLYS12
XLYS17
bLYS2
bLYS9
bLYS12
bLYS17
fLYS2
QARG2
fLYS9
fLYS12
fLYS17
QARG17
IARG2
IARG17
AARG2
AARG17
EARG2

site_idSWS_FT_FI2
Number of Residues8
DetailsMOD_RES: Phosphothreonine; by HASPIN and VRK1 => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
MTHR3
QTHR3
ITHR3
ATHR3
ETHR3
UTHR3
YTHR3
cTHR3

site_idSWS_FT_FI3
Number of Residues8
DetailsMOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:12138181
ChainResidueDetails
MLYS4
SLYS95
WLYS9
WLYS95
aLYS9
aLYS95
eLYS9
eLYS95
QLYS4
ILYS4
ALYS4
ELYS4
ULYS4
YLYS4
cLYS4
SLYS9

site_idSWS_FT_FI4
Number of Residues8
DetailsMOD_RES: 5-glutamyl serotonin; alternate => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
MGLN5
XLYS117
bLYS117
fLYS117
QGLN5
IGLN5
AGLN5
EGLN5
UGLN5
YGLN5
cGLN5
TLYS117

site_idSWS_FT_FI5
Number of Residues16
DetailsMOD_RES: Phosphothreonine; by PKC => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
MTHR6
ETHR11
UTHR6
UTHR11
YTHR6
YTHR11
cTHR6
cTHR11
FLYS8
FLYS16
FLYS44
MTHR11
FLYS79
VLYS8
VLYS16
VLYS44
VLYS79
ZLYS8
ZLYS16
ZLYS44
ZLYS79
dLYS8
QTHR6
dLYS16
dLYS44
dLYS79
QTHR11
ITHR6
ITHR11
ATHR6
ATHR11
ETHR6

site_idSWS_FT_FI6
Number of Residues8
DetailsMOD_RES: Symmetric dimethylarginine; by PRMT5; alternate => ECO:0000250
ChainResidueDetails
MARG8
FLYS20
VLYS12
VLYS20
ZLYS12
ZLYS20
dLYS12
dLYS20
QARG8
IARG8
AARG8
EARG8
UARG8
YARG8
cARG8
FLYS12

site_idSWS_FT_FI7
Number of Residues8
DetailsMOD_RES: N6-methyllysine; alternate => ECO:0000305|PubMed:12138181
ChainResidueDetails
MLYS9
FLYS91
VLYS31
VLYS91
ZLYS31
ZLYS91
dLYS31
dLYS91
QLYS9
ILYS9
ALYS9
ELYS9
ULYS9
YLYS9
cLYS9
FLYS31

site_idSWS_FT_FI8
Number of Residues8
DetailsMOD_RES: Phosphoserine; alternate; by AURKB, AURKC, RPS6KA3, RPS6KA4 and RPS6KA5 => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
MSER10
GLYS15
GLYS119
KLYS13
KLYS15
KLYS119
SLYS13
SLYS15
QSER10
SLYS119
WLYS13
WLYS15
WLYS119
aLYS13
aLYS15
aLYS119
eLYS13
ISER10
eLYS15
eLYS119
ASER10
ESER10
USER10
YSER10
cSER10
GLYS13

site_idSWS_FT_FI9
Number of Residues8
DetailsMOD_RES: N6-lactoyllysine; alternate => ECO:0000250|UniProtKB:P84228
ChainResidueDetails
MLYS14
FTYR88
VTYR51
VTYR88
ZTYR51
ZTYR88
dTYR51
dTYR88
QLYS14
ILYS14
ALYS14
ELYS14
ULYS14
YLYS14
cLYS14
FTYR51

site_idSWS_FT_FI10
Number of Residues40
DetailsMOD_RES: N6-methyllysine; alternate => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
MLYS18
QLYS64
ILYS18
ILYS23
ILYS27
ILYS36
ILYS64
ALYS18
ALYS23
ALYS27
ALYS36
MLYS23
ALYS64
ELYS18
ELYS23
ELYS27
ELYS36
ELYS64
ULYS18
ULYS23
ULYS27
ULYS36
MLYS27
ULYS64
YLYS18
YLYS23
YLYS27
YLYS36
YLYS64
cLYS18
cLYS23
cLYS27
cLYS36
MLYS36
cLYS64
MLYS64
QLYS18
QLYS23
QLYS27
QLYS36

site_idSWS_FT_FI11
Number of Residues8
DetailsMOD_RES: Citrulline => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
MARG26
QARG26
IARG26
AARG26
EARG26
UARG26
YARG26
cARG26

site_idSWS_FT_FI12
Number of Residues8
DetailsMOD_RES: Phosphoserine; alternate; by AURKB, AURKC and RPS6KA5 => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
MSER28
QSER28
ISER28
ASER28
ESER28
USER28
YSER28
cSER28

site_idSWS_FT_FI13
Number of Residues8
DetailsMOD_RES: N6-methyllysine => ECO:0000250|UniProtKB:P68431
ChainResidueDetails
MLYS37
FLYS91
VLYS91
ZLYS91
dLYS91
QLYS37
ILYS37
ALYS37
ELYS37
ULYS37
YLYS37
cLYS37

site_idSWS_FT_FI14
Number of Residues8
DetailsMOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
MTYR41
QTYR41
ITYR41
ATYR41
ETYR41
UTYR41
YTYR41
cTYR41

site_idSWS_FT_FI15
Number of Residues16
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P84228
ChainResidueDetails
MLYS56
ELYS79
ULYS56
ULYS79
YLYS56
YLYS79
cLYS56
cLYS79
MLYS79
QLYS56
QLYS79
ILYS56
ILYS79
ALYS56
ALYS79
ELYS56

site_idSWS_FT_FI16
Number of Residues8
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
MSER57
QSER57
ISER57
ASER57
ESER57
USER57
YSER57
cSER57

site_idSWS_FT_FI17
Number of Residues16
DetailsMOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
MTHR80
ETHR107
UTHR80
UTHR107
YTHR80
YTHR107
cTHR80
cTHR107
MTHR107
QTHR80
QTHR107
ITHR80
ITHR107
ATHR80
ATHR107
ETHR80

site_idSWS_FT_FI18
Number of Residues8
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P84243
ChainResidueDetails
MSER86
QSER86
ISER86
ASER86
ESER86
USER86
YSER86
cSER86

site_idSWS_FT_FI19
Number of Residues8
DetailsMOD_RES: N6-glutaryllysine; alternate => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
MLYS115
QLYS115
ILYS115
ALYS115
ELYS115
ULYS115
YLYS115
cLYS115

site_idSWS_FT_FI20
Number of Residues8
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
MLYS122
QLYS122
ILYS122
ALYS122
ELYS122
ULYS122
YLYS122
cLYS122

site_idSWS_FT_FI21
Number of Residues8
DetailsLIPID: S-palmitoyl cysteine => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
MCYS110
QCYS110
ICYS110
ACYS110
ECYS110
UCYS110
YCYS110
cCYS110

223166

PDB entries from 2024-07-31

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