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5OMF

Closed, ternary structure of KOD DNA polymerase

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue MN A 801
ChainResidue
AASP404
AGLU580
AMN802
ADTP810
AHOH913
AHOH928
AHOH992

site_idAC2
Number of Residues6
Detailsbinding site for residue MN A 802
ChainResidue
AASP542
AMN801
AMG807
ADTP810
AASP404
APHE405

site_idAC3
Number of Residues3
Detailsbinding site for residue EDO A 803
ChainResidue
AASP614
AGLU664
AGLN736

site_idAC4
Number of Residues6
Detailsbinding site for residue EDO A 804
ChainResidue
ATYR37
AGLU111
ATYR112
AASP113
AILE114
AHOH983

site_idAC5
Number of Residues5
Detailsbinding site for residue EDO A 805
ChainResidue
AASP4
ATHR5
AGLU251
ASER340
AASP343

site_idAC6
Number of Residues4
Detailsbinding site for residue EDO A 806
ChainResidue
APRO420
AARG503
ATRP504
ATYR505

site_idAC7
Number of Residues8
Detailsbinding site for residue MG A 807
ChainResidue
ATYR402
AASP404
AASP542
AMN802
ADTP810
AHOH1037
AHOH1095
PDC12

site_idAC8
Number of Residues5
Detailsbinding site for residue GOL A 808
ChainResidue
ATYR402
ATYR594
AARG606
AHOH1095
PDC12

site_idAC9
Number of Residues7
Detailsbinding site for residue GOL A 809
ChainResidue
AARG17
AASP235
AGLU426
AGLY427
ACYS428
ATYR431
AARG440

site_idAD1
Number of Residues19
Detailsbinding site for residue DTP A 810
ChainResidue
AASP404
APHE405
AARG406
ASER407
ALEU408
ATYR409
AARG460
ALYS487
AASN491
AASP542
AMN801
AMN802
AMG807
AHOH928
AHOH938
AHOH1014
PDC12
TDT4
TDG5

site_idAD2
Number of Residues3
Detailsbinding site for residue GOL P 101
ChainResidue
PDG7
PDG8
TDG8

Functional Information from PROSITE/UniProt
site_idPS00116
Number of Residues9
DetailsDNA_POLYMERASE_B DNA polymerase family B signature. YSDTDGFFA
ChainResidueDetails
ATYR538-ALA546

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PDB entries from 2025-06-18

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