5OMF
Closed, ternary structure of KOD DNA polymerase
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SLS BEAMLINE X06SA |
| Synchrotron site | SLS |
| Beamline | X06SA |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2016-08-10 |
| Detector | DECTRIS EIGER X 16M |
| Wavelength(s) | 0.9999766 |
| Spacegroup name | P 21 21 2 |
| Unit cell lengths | 107.909, 147.559, 71.142 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 46.266 - 2.092 |
| R-factor | 0.1973 |
| Rwork | 0.195 |
| R-free | 0.23350 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4k8z |
| RMSD bond length | 0.002 |
| RMSD bond angle | 0.527 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER |
| Refinement software | PHENIX ((1.12rc1_2815: ???)) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 49.190 | 2.220 |
| High resolution limit [Å] | 2.090 | 2.090 |
| Rmeas | 0.185 | 1.720 |
| Number of reflections | 127923 | |
| <I/σ(I)> | 6.37 | 0.81 |
| Completeness [%] | 98.8 | 95.8 |
| Redundancy | 3.56 | 3.41 |
| CC(1/2) | 0.993 | 0.285 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291 | 0.2 M DL-glutamatic acid, 0.2 M DL-alanine, 0.2 M glycine, 0.2 M DL-lysine monohydrochloride, 0.2 M DL-serine, 0.1 M Hepes/ 0.1 M Mops, 20 % glycerol, 10 % PEG 4000 |






