5OJM
Structure of a chimaeric beta3-alpha5 GABAA receptor in complex with nanobody Nb25
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004888 | molecular_function | transmembrane signaling receptor activity |
| A | 0004890 | molecular_function | GABA-A receptor activity |
| A | 0005216 | molecular_function | monoatomic ion channel activity |
| A | 0005230 | molecular_function | extracellular ligand-gated monoatomic ion channel activity |
| A | 0006811 | biological_process | monoatomic ion transport |
| A | 0016020 | cellular_component | membrane |
| A | 0034220 | biological_process | monoatomic ion transmembrane transport |
| B | 0004888 | molecular_function | transmembrane signaling receptor activity |
| B | 0004890 | molecular_function | GABA-A receptor activity |
| B | 0005216 | molecular_function | monoatomic ion channel activity |
| B | 0005230 | molecular_function | extracellular ligand-gated monoatomic ion channel activity |
| B | 0006811 | biological_process | monoatomic ion transport |
| B | 0016020 | cellular_component | membrane |
| B | 0034220 | biological_process | monoatomic ion transmembrane transport |
| C | 0004888 | molecular_function | transmembrane signaling receptor activity |
| C | 0004890 | molecular_function | GABA-A receptor activity |
| C | 0005216 | molecular_function | monoatomic ion channel activity |
| C | 0005230 | molecular_function | extracellular ligand-gated monoatomic ion channel activity |
| C | 0006811 | biological_process | monoatomic ion transport |
| C | 0016020 | cellular_component | membrane |
| C | 0034220 | biological_process | monoatomic ion transmembrane transport |
| D | 0004888 | molecular_function | transmembrane signaling receptor activity |
| D | 0004890 | molecular_function | GABA-A receptor activity |
| D | 0005216 | molecular_function | monoatomic ion channel activity |
| D | 0005230 | molecular_function | extracellular ligand-gated monoatomic ion channel activity |
| D | 0006811 | biological_process | monoatomic ion transport |
| D | 0016020 | cellular_component | membrane |
| D | 0034220 | biological_process | monoatomic ion transmembrane transport |
| E | 0004888 | molecular_function | transmembrane signaling receptor activity |
| E | 0004890 | molecular_function | GABA-A receptor activity |
| E | 0005216 | molecular_function | monoatomic ion channel activity |
| E | 0005230 | molecular_function | extracellular ligand-gated monoatomic ion channel activity |
| E | 0006811 | biological_process | monoatomic ion transport |
| E | 0016020 | cellular_component | membrane |
| E | 0034220 | biological_process | monoatomic ion transmembrane transport |
Functional Information from PROSITE/UniProt
| site_id | PS00236 |
| Number of Residues | 15 |
| Details | NEUROTR_ION_CHANNEL Neurotransmitter-gated ion-channels signature. CmMdLrrYPlDeqnC |
| Chain | Residue | Details |
| A | CYS136-CYS150 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 1100 |
| Details | TOPO_DOM: Extracellular => ECO:0000269|PubMed:24909990 |
| Chain | Residue | Details |
| A | GLN1-PHE229 | |
| B | GLN1-PHE229 | |
| C | GLN1-PHE229 | |
| D | GLN1-PHE229 | |
| E | GLN1-PHE229 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 10 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:24909990 |
| Chain | Residue | Details |
| A | ASP95 | |
| E | PHE200 | |
| A | PHE200 | |
| B | ASP95 | |
| B | PHE200 | |
| C | ASP95 | |
| C | PHE200 | |
| D | ASP95 | |
| D | PHE200 | |
| E | ASP95 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 15 |
| Details | BINDING: in chain B => ECO:0000269|PubMed:35355020, ECO:0007744|PDB:7QN7 |
| Chain | Residue | Details |
| A | TYR97 | |
| D | TYR97 | |
| D | SER156 | |
| D | THR202 | |
| E | TYR97 | |
| E | SER156 | |
| E | THR202 | |
| A | SER156 | |
| A | THR202 | |
| B | TYR97 | |
| B | SER156 | |
| B | THR202 | |
| C | TYR97 | |
| C | SER156 | |
| C | THR202 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 5 |
| Details | BINDING: in chain A => ECO:0000269|PubMed:35355020, ECO:0007744|PDB:7QN7 |
| Chain | Residue | Details |
| A | GLU155 | |
| B | GLU155 | |
| C | GLU155 | |
| D | GLU155 | |
| E | GLU155 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 5 |
| Details | BINDING: in chain A => ECO:0000269|PubMed:30140029, ECO:0007744|PDB:6A96 |
| Chain | Residue | Details |
| A | TYR157 | |
| B | TYR157 | |
| C | TYR157 | |
| D | TYR157 | |
| E | TYR157 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 5 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:24909990, ECO:0000269|PubMed:35355020, ECO:0007744|PDB:7QN7 |
| Chain | Residue | Details |
| A | ASN8 | |
| B | ASN8 | |
| C | ASN8 | |
| D | ASN8 | |
| E | ASN8 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 5 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:24909990, ECO:0000269|PubMed:30602789, ECO:0000269|PubMed:35355020, ECO:0007744|PDB:6I53, ECO:0007744|PDB:7QN7 |
| Chain | Residue | Details |
| A | ASN80 | |
| B | ASN80 | |
| C | ASN80 | |
| D | ASN80 | |
| E | ASN80 |
| site_id | SWS_FT_FI8 |
| Number of Residues | 5 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:24909990, ECO:0000269|PubMed:30140029, ECO:0000269|PubMed:30602789, ECO:0000269|PubMed:35355020, ECO:0007744|PDB:6A96, ECO:0007744|PDB:6I53, ECO:0007744|PDB:7QN7 |
| Chain | Residue | Details |
| A | ASN149 | |
| B | ASN149 | |
| C | ASN149 | |
| D | ASN149 | |
| E | ASN149 |
| site_id | SWS_FT_FI9 |
| Number of Residues | 410 |
| Details | TRANSMEM: Helical => ECO:0000269|PubMed:30140029, ECO:0007744|PDB:6A96 |
| Chain | Residue | Details |
| A | VAL230-LEU250 | |
| C | PRO256-ARG277 | |
| C | ALA288-THR309 | |
| C | MET397-TYR417 | |
| D | VAL230-LEU250 | |
| D | PRO256-ARG277 | |
| D | ALA288-THR309 | |
| D | MET397-TYR417 | |
| E | VAL230-LEU250 | |
| E | PRO256-ARG277 | |
| E | ALA288-THR309 | |
| A | PRO256-ARG277 | |
| E | MET397-TYR417 | |
| A | ALA288-THR309 | |
| A | MET397-TYR417 | |
| B | VAL230-LEU250 | |
| B | PRO256-ARG277 | |
| B | ALA288-THR309 | |
| B | MET397-TYR417 | |
| C | VAL230-LEU250 |
| site_id | SWS_FT_FI10 |
| Number of Residues | 20 |
| Details | TOPO_DOM: Cytoplasmic => ECO:0000305 |
| Chain | Residue | Details |
| A | ASN251-VAL255 | |
| B | ASN251-VAL255 | |
| C | ASN251-VAL255 | |
| D | ASN251-VAL255 | |
| E | ASN251-VAL255 |
| site_id | SWS_FT_FI11 |
| Number of Residues | 110 |
| Details | TOPO_DOM: Extracellular => ECO:0000305 |
| Chain | Residue | Details |
| A | ASN278-THR287 | |
| E | LEU418-LYS431 | |
| A | LEU418-LYS431 | |
| B | ASN278-THR287 | |
| B | LEU418-LYS431 | |
| C | ASN278-THR287 | |
| C | LEU418-LYS431 | |
| D | ASN278-THR287 | |
| D | LEU418-LYS431 | |
| E | ASN278-THR287 |
