Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5NKL

Crystal structure of the large fragment of DNA polymerase I from Thermus Aquaticus in a closed ternary complex with the artificial base pair dDs-dPxTP

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue MG A 901
ChainResidue
AASP610
AASP785
AMG902
A91T904
A91R905
AHOH1006
AHOH1168

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 902
ChainResidue
AASP785
AMG901
A91T904
A91R905
AASP610
ATYR611

site_idAC3
Number of Residues2
Detailsbinding site for residue ACT A 903
ChainResidue
APHE724
AHOH1043

site_idAC4
Number of Residues26
Detailsbinding site for residue 91T A 904
ChainResidue
AARG573
AASP610
ATYR611
ASER612
AGLN613
AILE614
AGLU615
AHIS639
AARG659
AARG660
ALYS663
APHE667
ATYR671
AASP785
AMG901
AMG902
A91R905
AHOH1007
AHOH1025
AHOH1054
AHOH1056
AHOH1168
BDOC112
BHOH208
C91N204
CDG205

site_idAC5
Number of Residues26
Detailsbinding site for residue 91R A 905
ChainResidue
AARG573
AASP610
ATYR611
ASER612
AGLN613
AILE614
AGLU615
AHIS639
AARG659
AARG660
ALYS663
APHE667
ATYR671
AASP785
AMG901
AMG902
A91T904
AHOH1007
AHOH1025
AHOH1054
AHOH1056
AHOH1168
BDOC112
BHOH208
C91N204
CDG205

site_idAC6
Number of Residues5
Detailsbinding site for residue GOL C 301
ChainResidue
BDC111
BHOH206
CDG205
CDG206
CGOL302

site_idAC7
Number of Residues5
Detailsbinding site for residue GOL C 302
ChainResidue
CDG205
CDG206
CGOL301
CHOH406
CHOH409

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues422
DetailsRegion: {"description":"Polymerase","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon