5NFN
JMJD7 IN COMPLEX WITH MN AND 2OG IN THE H32 FORM
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004175 | molecular_function | endopeptidase activity |
A | 0004177 | molecular_function | aminopeptidase activity |
A | 0004497 | molecular_function | monooxygenase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005634 | cellular_component | nucleus |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0006508 | biological_process | proteolysis |
A | 0016706 | molecular_function | 2-oxoglutarate-dependent dioxygenase activity |
A | 0018126 | biological_process | protein hydroxylation |
A | 0035064 | molecular_function | methylated histone binding |
A | 0046872 | molecular_function | metal ion binding |
A | 0106155 | molecular_function | peptidyl-lysine 3-dioxygenase activity |
B | 0004175 | molecular_function | endopeptidase activity |
B | 0004177 | molecular_function | aminopeptidase activity |
B | 0004497 | molecular_function | monooxygenase activity |
B | 0005515 | molecular_function | protein binding |
B | 0005634 | cellular_component | nucleus |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0006508 | biological_process | proteolysis |
B | 0016706 | molecular_function | 2-oxoglutarate-dependent dioxygenase activity |
B | 0018126 | biological_process | protein hydroxylation |
B | 0035064 | molecular_function | methylated histone binding |
B | 0046872 | molecular_function | metal ion binding |
B | 0106155 | molecular_function | peptidyl-lysine 3-dioxygenase activity |
C | 0004175 | molecular_function | endopeptidase activity |
C | 0004177 | molecular_function | aminopeptidase activity |
C | 0004497 | molecular_function | monooxygenase activity |
C | 0005515 | molecular_function | protein binding |
C | 0005634 | cellular_component | nucleus |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0006508 | biological_process | proteolysis |
C | 0016706 | molecular_function | 2-oxoglutarate-dependent dioxygenase activity |
C | 0018126 | biological_process | protein hydroxylation |
C | 0035064 | molecular_function | methylated histone binding |
C | 0046872 | molecular_function | metal ion binding |
C | 0106155 | molecular_function | peptidyl-lysine 3-dioxygenase activity |
D | 0004175 | molecular_function | endopeptidase activity |
D | 0004177 | molecular_function | aminopeptidase activity |
D | 0004497 | molecular_function | monooxygenase activity |
D | 0005515 | molecular_function | protein binding |
D | 0005634 | cellular_component | nucleus |
D | 0005737 | cellular_component | cytoplasm |
D | 0005829 | cellular_component | cytosol |
D | 0006508 | biological_process | proteolysis |
D | 0016706 | molecular_function | 2-oxoglutarate-dependent dioxygenase activity |
D | 0018126 | biological_process | protein hydroxylation |
D | 0035064 | molecular_function | methylated histone binding |
D | 0046872 | molecular_function | metal ion binding |
D | 0106155 | molecular_function | peptidyl-lysine 3-dioxygenase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | binding site for residue MN A 501 |
Chain | Residue |
A | HIS178 |
A | ASP180 |
A | HIS277 |
A | AKG502 |
A | HOH632 |
site_id | AC2 |
Number of Residues | 14 |
Details | binding site for residue AKG A 502 |
Chain | Residue |
A | ASP180 |
A | ASN184 |
A | TYR186 |
A | LYS193 |
A | HIS277 |
A | VAL279 |
A | TRP291 |
A | MN501 |
A | HOH601 |
A | HOH632 |
A | TYR127 |
A | TRP167 |
A | THR175 |
A | HIS178 |
site_id | AC3 |
Number of Residues | 2 |
Details | binding site for residue NO3 A 503 |
Chain | Residue |
A | ASP162 |
A | ASP293 |
site_id | AC4 |
Number of Residues | 3 |
Details | binding site for residue NO3 A 504 |
Chain | Residue |
A | GLU12 |
A | GLU15 |
B | SER308 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue MN B 501 |
Chain | Residue |
B | HIS178 |
B | ASP180 |
B | HIS277 |
B | AKG502 |
B | HOH637 |
site_id | AC6 |
Number of Residues | 14 |
Details | binding site for residue AKG B 502 |
Chain | Residue |
B | TYR127 |
B | TRP167 |
B | THR175 |
B | HIS178 |
B | ASP180 |
B | ASN184 |
B | TYR186 |
B | LYS193 |
B | HIS277 |
B | VAL279 |
B | ASN289 |
B | TRP291 |
B | MN501 |
B | HOH637 |
site_id | AC7 |
Number of Residues | 2 |
Details | binding site for residue GOL B 503 |
Chain | Residue |
B | ASP162 |
B | ASP293 |
site_id | AC8 |
Number of Residues | 2 |
Details | binding site for residue GOL B 504 |
Chain | Residue |
B | MET232 |
B | GLU233 |
site_id | AC9 |
Number of Residues | 3 |
Details | binding site for residue GOL B 505 |
Chain | Residue |
B | SER254 |
B | ALA256 |
B | GLN257 |
site_id | AD1 |
Number of Residues | 4 |
Details | binding site for residue MN C 501 |
Chain | Residue |
C | HIS178 |
C | ASP180 |
C | HIS277 |
C | HOH622 |
site_id | AD2 |
Number of Residues | 4 |
Details | binding site for residue NO3 C 502 |
Chain | Residue |
C | THR37 |
C | PRO38 |
C | LEU39 |
C | HOH635 |
site_id | AD3 |
Number of Residues | 5 |
Details | binding site for residue MN D 501 |
Chain | Residue |
D | HIS178 |
D | ASP180 |
D | HIS277 |
D | AKG502 |
D | HOH625 |
site_id | AD4 |
Number of Residues | 13 |
Details | binding site for residue AKG D 502 |
Chain | Residue |
D | TYR127 |
D | TRP167 |
D | THR175 |
D | HIS178 |
D | ASP180 |
D | ASN184 |
D | TYR186 |
D | LYS193 |
D | HIS277 |
D | VAL279 |
D | ASN289 |
D | MN501 |
D | HOH625 |
site_id | AD5 |
Number of Residues | 6 |
Details | binding site for residue GOL D 503 |
Chain | Residue |
D | GLU183 |
D | ASP293 |
D | MET294 |
D | GLU295 |
D | ASP297 |
D | LYS299 |
site_id | AD6 |
Number of Residues | 5 |
Details | binding site for residue NO3 D 504 |
Chain | Residue |
B | ASP88 |
D | GLN121 |
D | HIS122 |
D | GLY124 |
D | HOH610 |
site_id | AD7 |
Number of Residues | 2 |
Details | binding site for residue NO3 D 505 |
Chain | Residue |
D | LEU143 |
D | SER148 |
site_id | AD8 |
Number of Residues | 4 |
Details | binding site for residue NO3 D 506 |
Chain | Residue |
D | SER254 |
D | ALA256 |
D | HOH607 |
D | HOH644 |
site_id | AD9 |
Number of Residues | 3 |
Details | binding site for residue NO3 D 507 |
Chain | Residue |
D | ARG203 |
D | ASP307 |
D | HOH641 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000269|PubMed:29915238 |
Chain | Residue | Details |
A | HIS178 | |
D | HIS178 | |
D | ASP180 | |
D | HIS277 | |
A | ASP180 | |
A | HIS277 | |
B | HIS178 | |
B | ASP180 | |
B | HIS277 | |
C | HIS178 | |
C | ASP180 | |
C | HIS277 |