5NDH

The structure of the G. violaceus guanidine II riboswitch P2 stem-loop

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	binding site for residue GAI A 101

Chain	Residue
A	G6
A	A7
A	C8
A	G9

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site_id	AC2
Number of Residues	2
Details	binding site for residue NA A 102

Chain	Residue
A	C8
C	HOH220

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site_id	AC3
Number of Residues	5
Details	binding site for residue MG A 103

Chain	Residue
A	HOH218
B	G4
A	G15
A	C16
A	HOH216

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site_id	AC4
Number of Residues	4
Details	binding site for residue GAI B 101

Chain	Residue
B	G6
B	A7
B	C8
B	G9

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site_id	AC5
Number of Residues	3
Details	binding site for residue NA B 102

Chain	Residue
B	CBV2
B	G3
B	G4

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site_id	AC6
Number of Residues	1
Details	binding site for residue NA B 103

Chain	Residue
B	G1

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site_id	AC7
Number of Residues	4
Details	binding site for residue GAI C 101

Chain	Residue
C	G6
C	A7
C	C8
C	G9

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site_id	AC8
Number of Residues	2
Details	binding site for residue NA C 102

Chain	Residue
A	C11
C	C8

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site_id	AC9
Number of Residues	4
Details	binding site for residue GAI D 101

Chain	Residue
D	G6
D	A7
D	C8
D	G9

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site_id	AD1
Number of Residues	6
Details	binding site for residue SO4 D 102

Chain	Residue
B	A10
C	G4
C	G5
D	A10
D	HOH202
D	HOH218

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site_id	AD2
Number of Residues	4
Details	binding site for residue SO4 D 103

Chain	Residue
D	G4
D	C13
D	C14
D	HOH205

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site_id	AD3
Number of Residues	8
Details	binding site for Di-nucleotide G B 1 and CBV B 2

Chain	Residue
B	G3
B	G15
B	C16
B	NA102
B	NA103
B	HOH213
C	G1
C	C16

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site_id	AD4
Number of Residues	10
Details	binding site for Di-nucleotide CBV B 2 and G B 3

Chain	Residue
A	G15
A	HOH206
A	HOH207
B	G1
B	G4
B	C14
B	G15
B	C16
B	NA102
B	HOH213

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site_id	AD5
Number of Residues	8
Details	binding site for Di-nucleotide G C 1 and CBV C 2

Chain	Residue
B	G1
B	C16
C	G3
C	G15
C	C16
C	HOH201
C	HOH207
C	HOH213

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site_id	AD6
Number of Residues	9
Details	binding site for Di-nucleotide CBV C 2 and G C 3

Chain	Residue
B	A10
C	G1
C	G4
C	C14
C	G15
C	C16
C	HOH201
C	HOH212
C	HOH213

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site_id	AD7
Number of Residues	7
Details	binding site for Di-nucleotide G D 1 and CBV D 2

Chain	Residue
A	G1
A	C16
A	HOH211
D	G3
D	G15
D	C16
D	HOH222

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site_id	AD8
Number of Residues	7
Details	binding site for Di-nucleotide CBV D 2 and G D 3

Chain	Residue
A	A10
D	G1
D	G4
D	C14
D	G15
D	HOH208
D	HOH222

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