Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5NCO

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
a	0000027	biological_process	ribosomal large subunit assembly
a	0002181	biological_process	cytoplasmic translation
a	0003735	molecular_function	structural constituent of ribosome
a	0005737	cellular_component	cytoplasm
a	0005840	cellular_component	ribosome
a	0006412	biological_process	translation
a	0015934	cellular_component	large ribosomal subunit
a	0022625	cellular_component	cytosolic large ribosomal subunit
a	1990904	cellular_component	ribonucleoprotein complex
b	0000027	biological_process	ribosomal large subunit assembly
b	0000302	biological_process	response to reactive oxygen species
b	0002181	biological_process	cytoplasmic translation
b	0003735	molecular_function	structural constituent of ribosome
b	0005515	molecular_function	protein binding
b	0005737	cellular_component	cytoplasm
b	0005829	cellular_component	cytosol
b	0005840	cellular_component	ribosome
b	0006412	biological_process	translation
b	0009314	biological_process	response to radiation
b	0015934	cellular_component	large ribosomal subunit
b	0022625	cellular_component	cytosolic large ribosomal subunit
b	1990904	cellular_component	ribonucleoprotein complex
c	0000027	biological_process	ribosomal large subunit assembly
c	0000049	molecular_function	tRNA binding
c	0002181	biological_process	cytoplasmic translation
c	0003735	molecular_function	structural constituent of ribosome
c	0005737	cellular_component	cytoplasm
c	0005829	cellular_component	cytosol
c	0005840	cellular_component	ribosome
c	0006412	biological_process	translation
c	0022625	cellular_component	cytosolic large ribosomal subunit
c	0043229	cellular_component	intracellular organelle
c	0046677	biological_process	response to antibiotic
c	1990904	cellular_component	ribonucleoprotein complex
C	0000027	biological_process	ribosomal large subunit assembly
C	0002181	biological_process	cytoplasmic translation
C	0003723	molecular_function	RNA binding
C	0003735	molecular_function	structural constituent of ribosome
C	0005515	molecular_function	protein binding
C	0005737	cellular_component	cytoplasm
C	0005829	cellular_component	cytosol
C	0005840	cellular_component	ribosome
C	0006412	biological_process	translation
C	0008270	molecular_function	zinc ion binding
C	0015934	cellular_component	large ribosomal subunit
C	0016740	molecular_function	transferase activity
C	0019843	molecular_function	rRNA binding
C	0022625	cellular_component	cytosolic large ribosomal subunit
C	0032297	biological_process	negative regulation of DNA-templated DNA replication initiation
C	1990082	cellular_component	DnaA-L2 complex
C	1990904	cellular_component	ribonucleoprotein complex
d	0002181	biological_process	cytoplasmic translation
d	0003735	molecular_function	structural constituent of ribosome
d	0005515	molecular_function	protein binding
d	0005737	cellular_component	cytoplasm
d	0005840	cellular_component	ribosome
d	0006412	biological_process	translation
d	0022625	cellular_component	cytosolic large ribosomal subunit
d	1990904	cellular_component	ribonucleoprotein complex
D	0000027	biological_process	ribosomal large subunit assembly
D	0002181	biological_process	cytoplasmic translation
D	0003735	molecular_function	structural constituent of ribosome
D	0005515	molecular_function	protein binding
D	0005737	cellular_component	cytoplasm
D	0005829	cellular_component	cytosol
D	0005840	cellular_component	ribosome
D	0006412	biological_process	translation
D	0019843	molecular_function	rRNA binding
D	0022625	cellular_component	cytosolic large ribosomal subunit
D	1990904	cellular_component	ribonucleoprotein complex
e	0002181	biological_process	cytoplasmic translation
e	0003735	molecular_function	structural constituent of ribosome
e	0005737	cellular_component	cytoplasm
e	0005840	cellular_component	ribosome
e	0006412	biological_process	translation
e	0022625	cellular_component	cytosolic large ribosomal subunit
e	1990904	cellular_component	ribonucleoprotein complex
E	0001070	molecular_function	RNA-binding transcription regulator activity
E	0002181	biological_process	cytoplasmic translation
E	0003677	molecular_function	DNA binding
E	0003735	molecular_function	structural constituent of ribosome
E	0005515	molecular_function	protein binding
E	0005737	cellular_component	cytoplasm
E	0005829	cellular_component	cytosol
E	0005840	cellular_component	ribosome
E	0006353	biological_process	DNA-templated transcription termination
E	0006412	biological_process	translation
E	0006417	biological_process	regulation of translation
E	0015934	cellular_component	large ribosomal subunit
E	0017148	biological_process	negative regulation of translation
E	0019843	molecular_function	rRNA binding
E	0022625	cellular_component	cytosolic large ribosomal subunit
E	0030371	molecular_function	translation repressor activity
E	0031555	biological_process	transcriptional attenuation
E	0042255	biological_process	ribosome assembly
E	0045892	biological_process	negative regulation of DNA-templated transcription
E	0046677	biological_process	response to antibiotic
E	0048027	molecular_function	mRNA 5'-UTR binding
E	0060698	molecular_function	endoribonuclease inhibitor activity
E	1990904	cellular_component	ribonucleoprotein complex
E	2000766	biological_process	negative regulation of cytoplasmic translation
f	0002181	biological_process	cytoplasmic translation
f	0003735	molecular_function	structural constituent of ribosome
f	0005737	cellular_component	cytoplasm
f	0005840	cellular_component	ribosome
f	0006412	biological_process	translation
f	0022625	cellular_component	cytosolic large ribosomal subunit
f	0043229	cellular_component	intracellular organelle
f	1990904	cellular_component	ribonucleoprotein complex
F	0000027	biological_process	ribosomal large subunit assembly
F	0000049	molecular_function	tRNA binding
F	0002181	biological_process	cytoplasmic translation
F	0003723	molecular_function	RNA binding
F	0003735	molecular_function	structural constituent of ribosome
F	0005737	cellular_component	cytoplasm
F	0005829	cellular_component	cytosol
F	0005840	cellular_component	ribosome
F	0006412	biological_process	translation
F	0008097	molecular_function	5S rRNA binding
F	0019843	molecular_function	rRNA binding
F	0022625	cellular_component	cytosolic large ribosomal subunit
F	1990904	cellular_component	ribonucleoprotein complex
g	0005048	molecular_function	signal sequence binding
g	0005515	molecular_function	protein binding
g	0005886	cellular_component	plasma membrane
g	0006605	biological_process	protein targeting
g	0006616	biological_process	SRP-dependent cotranslational protein targeting to membrane, translocation
g	0006886	biological_process	intracellular protein transport
g	0008320	molecular_function	protein transmembrane transporter activity
g	0015031	biological_process	protein transport
g	0016020	cellular_component	membrane
g	0031522	cellular_component	cell envelope Sec protein transport complex
g	0032978	biological_process	protein insertion into membrane from inner side
g	0043952	biological_process	protein transport by the Sec complex
g	0065002	biological_process	intracellular protein transmembrane transport
G	0000027	biological_process	ribosomal large subunit assembly
G	0002181	biological_process	cytoplasmic translation
G	0003735	molecular_function	structural constituent of ribosome
G	0005737	cellular_component	cytoplasm
G	0005829	cellular_component	cytosol
G	0005840	cellular_component	ribosome
G	0006412	biological_process	translation
G	0019843	molecular_function	rRNA binding
G	0022625	cellular_component	cytosolic large ribosomal subunit
G	0046677	biological_process	response to antibiotic
G	0070180	molecular_function	large ribosomal subunit rRNA binding
G	1990904	cellular_component	ribonucleoprotein complex
h	0006605	biological_process	protein targeting
h	0006886	biological_process	intracellular protein transport
h	0008320	molecular_function	protein transmembrane transporter activity
h	0009306	biological_process	protein secretion
h	0016020	cellular_component	membrane
H	0002181	biological_process	cytoplasmic translation
H	0003735	molecular_function	structural constituent of ribosome
H	0005515	molecular_function	protein binding
H	0005737	cellular_component	cytoplasm
H	0005829	cellular_component	cytosol
H	0005840	cellular_component	ribosome
H	0006412	biological_process	translation
H	0019843	molecular_function	rRNA binding
H	0022625	cellular_component	cytosolic large ribosomal subunit
H	0070180	molecular_function	large ribosomal subunit rRNA binding
H	1990904	cellular_component	ribonucleoprotein complex
i	0003723	molecular_function	RNA binding
i	0003924	molecular_function	GTPase activity
i	0005515	molecular_function	protein binding
i	0005525	molecular_function	GTP binding
i	0005737	cellular_component	cytoplasm
i	0005829	cellular_component	cytosol
i	0006612	biological_process	protein targeting to membrane
i	0006614	biological_process	SRP-dependent cotranslational protein targeting to membrane
i	0008312	molecular_function	7S RNA binding
i	0016787	molecular_function	hydrolase activity
i	0016887	molecular_function	ATP hydrolysis activity
i	0048500	cellular_component	signal recognition particle
i	1990904	cellular_component	ribonucleoprotein complex
I	0003735	molecular_function	structural constituent of ribosome
I	0006412	biological_process	translation
I	0015934	cellular_component	large ribosomal subunit
j	0009306	biological_process	protein secretion
j	0015450	molecular_function	protein-transporting ATPase activity
j	0016020	cellular_component	membrane
J	0000027	biological_process	ribosomal large subunit assembly
J	0002181	biological_process	cytoplasmic translation
J	0003735	molecular_function	structural constituent of ribosome
J	0005515	molecular_function	protein binding
J	0005737	cellular_component	cytoplasm
J	0005829	cellular_component	cytosol
J	0005840	cellular_component	ribosome
J	0006412	biological_process	translation
J	0006415	biological_process	translational termination
J	0015968	biological_process	stringent response
J	0019843	molecular_function	rRNA binding
J	0022625	cellular_component	cytosolic large ribosomal subunit
J	0070180	molecular_function	large ribosomal subunit rRNA binding
J	1990904	cellular_component	ribonucleoprotein complex
K	0002181	biological_process	cytoplasmic translation
K	0003729	molecular_function	mRNA binding
K	0003735	molecular_function	structural constituent of ribosome
K	0005737	cellular_component	cytoplasm
K	0005829	cellular_component	cytosol
K	0005840	cellular_component	ribosome
K	0006412	biological_process	translation
K	0008270	molecular_function	zinc ion binding
K	0017148	biological_process	negative regulation of translation
K	0022625	cellular_component	cytosolic large ribosomal subunit
K	0043229	cellular_component	intracellular organelle
K	0048027	molecular_function	mRNA 5'-UTR binding
K	0070180	molecular_function	large ribosomal subunit rRNA binding
K	1990904	cellular_component	ribonucleoprotein complex
l	0005525	molecular_function	GTP binding
l	0006614	biological_process	SRP-dependent cotranslational protein targeting to membrane
l	0016887	molecular_function	ATP hydrolysis activity
L	0002181	biological_process	cytoplasmic translation
L	0003735	molecular_function	structural constituent of ribosome
L	0005515	molecular_function	protein binding
L	0005737	cellular_component	cytoplasm
L	0005829	cellular_component	cytosol
L	0005840	cellular_component	ribosome
L	0006412	biological_process	translation
L	0015934	cellular_component	large ribosomal subunit
L	0019843	molecular_function	rRNA binding
L	0022625	cellular_component	cytosolic large ribosomal subunit
L	0070180	molecular_function	large ribosomal subunit rRNA binding
L	1990904	cellular_component	ribonucleoprotein complex
M	0002181	biological_process	cytoplasmic translation
M	0003735	molecular_function	structural constituent of ribosome
M	0005515	molecular_function	protein binding
M	0005737	cellular_component	cytoplasm
M	0005840	cellular_component	ribosome
M	0006412	biological_process	translation
M	0015934	cellular_component	large ribosomal subunit
M	0019843	molecular_function	rRNA binding
M	0022625	cellular_component	cytosolic large ribosomal subunit
M	1990904	cellular_component	ribonucleoprotein complex
N	0000027	biological_process	ribosomal large subunit assembly
N	0000049	molecular_function	tRNA binding
N	0002181	biological_process	cytoplasmic translation
N	0003735	molecular_function	structural constituent of ribosome
N	0005737	cellular_component	cytoplasm
N	0005840	cellular_component	ribosome
N	0006412	biological_process	translation
N	0019843	molecular_function	rRNA binding
N	0022625	cellular_component	cytosolic large ribosomal subunit
N	1990904	cellular_component	ribonucleoprotein complex
O	0000027	biological_process	ribosomal large subunit assembly
O	0002181	biological_process	cytoplasmic translation
O	0003735	molecular_function	structural constituent of ribosome
O	0005515	molecular_function	protein binding
O	0005737	cellular_component	cytoplasm
O	0005829	cellular_component	cytosol
O	0005840	cellular_component	ribosome
O	0006412	biological_process	translation
O	0022625	cellular_component	cytosolic large ribosomal subunit
O	1990904	cellular_component	ribonucleoprotein complex
P	0002181	biological_process	cytoplasmic translation
P	0003735	molecular_function	structural constituent of ribosome
P	0005737	cellular_component	cytoplasm
P	0005829	cellular_component	cytosol
P	0005840	cellular_component	ribosome
P	0006412	biological_process	translation
P	0008097	molecular_function	5S rRNA binding
P	0019843	molecular_function	rRNA binding
P	0022625	cellular_component	cytosolic large ribosomal subunit
P	0043229	cellular_component	intracellular organelle
P	1990904	cellular_component	ribonucleoprotein complex
Q	0000027	biological_process	ribosomal large subunit assembly
Q	0002181	biological_process	cytoplasmic translation
Q	0003735	molecular_function	structural constituent of ribosome
Q	0005737	cellular_component	cytoplasm
Q	0005829	cellular_component	cytosol
Q	0005840	cellular_component	ribosome
Q	0006412	biological_process	translation
Q	0019843	molecular_function	rRNA binding
Q	0022625	cellular_component	cytosolic large ribosomal subunit
Q	0070180	molecular_function	large ribosomal subunit rRNA binding
Q	1990904	cellular_component	ribonucleoprotein complex
R	0000027	biological_process	ribosomal large subunit assembly
R	0000900	molecular_function	mRNA regulatory element binding translation repressor activity
R	0002181	biological_process	cytoplasmic translation
R	0003729	molecular_function	mRNA binding
R	0003735	molecular_function	structural constituent of ribosome
R	0005737	cellular_component	cytoplasm
R	0005829	cellular_component	cytosol
R	0005840	cellular_component	ribosome
R	0006412	biological_process	translation
R	0017148	biological_process	negative regulation of translation
R	0019843	molecular_function	rRNA binding
R	0022625	cellular_component	cytosolic large ribosomal subunit
R	0070180	molecular_function	large ribosomal subunit rRNA binding
R	1990904	cellular_component	ribonucleoprotein complex
S	0002181	biological_process	cytoplasmic translation
S	0003723	molecular_function	RNA binding
S	0003735	molecular_function	structural constituent of ribosome
S	0005737	cellular_component	cytoplasm
S	0005829	cellular_component	cytosol
S	0005840	cellular_component	ribosome
S	0006412	biological_process	translation
S	0019843	molecular_function	rRNA binding
S	0022625	cellular_component	cytosolic large ribosomal subunit
S	0043229	cellular_component	intracellular organelle
S	1990904	cellular_component	ribonucleoprotein complex
T	0002181	biological_process	cytoplasmic translation
T	0003735	molecular_function	structural constituent of ribosome
T	0005515	molecular_function	protein binding
T	0005737	cellular_component	cytoplasm
T	0005829	cellular_component	cytosol
T	0005840	cellular_component	ribosome
T	0006412	biological_process	translation
T	0015934	cellular_component	large ribosomal subunit
T	0019843	molecular_function	rRNA binding
T	0022625	cellular_component	cytosolic large ribosomal subunit
T	0042255	biological_process	ribosome assembly
T	0042256	biological_process	cytosolic ribosome assembly
T	0046677	biological_process	response to antibiotic
T	0070180	molecular_function	large ribosomal subunit rRNA binding
T	1902626	biological_process	assembly of large subunit precursor of preribosome
T	1990904	cellular_component	ribonucleoprotein complex
U	0000027	biological_process	ribosomal large subunit assembly
U	0002181	biological_process	cytoplasmic translation
U	0003735	molecular_function	structural constituent of ribosome
U	0005515	molecular_function	protein binding
U	0005737	cellular_component	cytoplasm
U	0005840	cellular_component	ribosome
U	0006412	biological_process	translation
U	0019843	molecular_function	rRNA binding
U	0022625	cellular_component	cytosolic large ribosomal subunit
U	1990904	cellular_component	ribonucleoprotein complex
V	0000027	biological_process	ribosomal large subunit assembly
V	0002181	biological_process	cytoplasmic translation
V	0003723	molecular_function	RNA binding
V	0003735	molecular_function	structural constituent of ribosome
V	0005515	molecular_function	protein binding
V	0005737	cellular_component	cytoplasm
V	0005829	cellular_component	cytosol
V	0005840	cellular_component	ribosome
V	0006412	biological_process	translation
V	0019843	molecular_function	rRNA binding
V	0022625	cellular_component	cytosolic large ribosomal subunit
V	0070180	molecular_function	large ribosomal subunit rRNA binding
V	1990904	cellular_component	ribonucleoprotein complex
W	0000027	biological_process	ribosomal large subunit assembly
W	0002181	biological_process	cytoplasmic translation
W	0003723	molecular_function	RNA binding
W	0003735	molecular_function	structural constituent of ribosome
W	0005737	cellular_component	cytoplasm
W	0005829	cellular_component	cytosol
W	0005840	cellular_component	ribosome
W	0006412	biological_process	translation
W	0008097	molecular_function	5S rRNA binding
W	0009314	biological_process	response to radiation
W	0017148	biological_process	negative regulation of translation
W	0019843	molecular_function	rRNA binding
W	0022625	cellular_component	cytosolic large ribosomal subunit
W	1990904	cellular_component	ribonucleoprotein complex
X	0003735	molecular_function	structural constituent of ribosome
X	0005840	cellular_component	ribosome
X	0006412	biological_process	translation
Y	0000027	biological_process	ribosomal large subunit assembly
Y	0002181	biological_process	cytoplasmic translation
Y	0003735	molecular_function	structural constituent of ribosome
Y	0005515	molecular_function	protein binding
Y	0005737	cellular_component	cytoplasm
Y	0005829	cellular_component	cytosol
Y	0005840	cellular_component	ribosome
Y	0006412	biological_process	translation
Y	0019843	molecular_function	rRNA binding
Y	0022625	cellular_component	cytosolic large ribosomal subunit
Y	1990904	cellular_component	ribonucleoprotein complex
Z	0000027	biological_process	ribosomal large subunit assembly
Z	0002181	biological_process	cytoplasmic translation
Z	0003735	molecular_function	structural constituent of ribosome
Z	0005737	cellular_component	cytoplasm
Z	0005840	cellular_component	ribosome
Z	0006412	biological_process	translation
Z	0019843	molecular_function	rRNA binding
Z	0022625	cellular_component	cytosolic large ribosomal subunit
Z	1990904	cellular_component	ribonucleoprotein complex

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	binding site for residue ZN f 101

Chain	Residue
f	CYS11
f	CYS14
f	CYS27
f	HIS33

site_id	AC2
Number of Residues	11
Details	binding site for residue ALF i 1001

Chain	Residue
i	THR191
i	ALA192
i	GLY193
i	MG1002
i	GDP1003
l	GDP1003
i	GLN109
i	GLY110
i	LYS113
i	ASP138
i	ARG141

site_id	AC3
Number of Residues	4
Details	binding site for residue MG i 1002

Chain	Residue
i	THR114
i	ASP190
i	ALF1001
i	GDP1003

site_id	AC4
Number of Residues	20
Details	binding site for residue GDP i 1003

Chain	Residue
i	GLY110
i	ALA111
i	GLY112
i	LYS113
i	THR114
i	THR115
i	LYS119
i	ARG141
i	GLN147
i	THR248
i	LYS249
i	ASP251
i	GLY274
i	GLY276
i	GLU277
i	ALF1001
i	MG1002
l	ASN108
l	ARG139
l	ALF1001

site_id	AC5
Number of Residues	9
Details	binding site for residue ALF l 1001

Chain	Residue
i	GDP1003
l	ASN108
l	LYS112
l	ASP136
l	ARG139
l	ALA190
l	GLY191
l	MG1002
l	GDP1003

site_id	AC6
Number of Residues	4
Details	binding site for residue MG l 1002

Chain	Residue
l	THR113
l	ASP188
l	ALF1001
l	GDP1003

site_id	AC7
Number of Residues	17
Details	binding site for residue GDP l 1003

Chain	Residue
i	GLN109
i	ARG141
i	ALF1001
l	GLY109
l	GLY111
l	LYS112
l	THR113
l	THR114
l	ARG139
l	THR252
l	LYS253
l	ASP255
l	GLY278
l	GLY280
l	GLU281
l	ALF1001
l	MG1002

Functional Information from PROSITE/UniProt

site_id	PS00049
Number of Residues	27
Details	RIBOSOMAL_L14 Ribosomal protein L14 signature. AVVVrtkkgvrrp.DGsvirFdgNacVL

Chain	Residue	Details
L	ALA60-LEU86

site_id	PS00050
Number of Residues	16
Details	RIBOSOMAL_L23 Ribosomal protein L23 signature. KKAYVTLKegqnldfV

Chain	Residue	Details
U	LYS81-VAL96

site_id	PS00300
Number of Residues	14
Details	SRP54 SRP54-type proteins GTP-binding domain signature. PIkFLGVGEkTeaL

Chain	Residue	Details
i	PRO269-LEU282
l	PRO273-LEU286

site_id	PS00358
Number of Residues	17
Details	RIBOSOMAL_L5 Ribosomal protein L5 signature. LaaISGQkpLiTkARkS

Chain	Residue	Details
F	LEU57-SER73

site_id	PS00359
Number of Residues	15
Details	RIBOSOMAL_L11 Ribosomal protein L11 signature. RsIeGTarSMGlVV.E

Chain	Residue	Details
J	ARG127-GLU141

site_id	PS00430
Number of Residues	65
Details	TONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. ireerllkvlraphvsekastameksntivlkvakdatkaeikaavqklfevevevv..........................................................NTLVVKGK

Chain	Residue	Details
U	ILE2-LYS66

site_id	PS00464
Number of Residues	25
Details	RIBOSOMAL_L22 Ribosomal protein L22 signature. KriMpRAkGRadrilkrtSHITVvV

Chain	Residue	Details
T	LYS83-VAL107

site_id	PS00467
Number of Residues	12
Details	RIBOSOMAL_L2 Ribosomal protein L2 signature. PtvRGTAmNPvD

Chain	Residue	Details
C	PRO218-ASP229

site_id	PS00474
Number of Residues	24
Details	RIBOSOMAL_L3 Ribosomal protein L3 signature. FadvkkvDvtGtSkGKGfaGtvkR

Chain	Residue	Details
D	PHE101-ARG124

site_id	PS00475
Number of Residues	31
Details	RIBOSOMAL_L15 Ribosomal protein L15 signature. KVILaGeVttp..VtVrglrVTkgAraaIeaaG

Chain	Residue	Details
M	LYS109-GLY139

site_id	PS00525
Number of Residues	9
Details	RIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PEpYKGKGV

Chain	Residue	Details
G	PRO154-VAL162

site_id	PS00579
Number of Residues	15
Details	RIBOSOMAL_L29 Ribosomal protein L29 signature. QSHLLKqVRRDVARV

Chain	Residue	Details
Z	GLN39-VAL53

site_id	PS00582
Number of Residues	20
Details	RIBOSOMAL_L33 Ribosomal protein L33 signature. YtTtKNkrtkPekLElkKFD

Chain	Residue	Details
c	TYR21-ASP40

site_id	PS00586
Number of Residues	12
Details	RIBOSOMAL_L16_1 Ribosomal protein L16 signature 1. KRqGKIWIRVFP

Chain	Residue	Details
N	LYS58-PRO69

site_id	PS00634
Number of Residues	33
Details	RIBOSOMAL_L30 Ribosomal protein L30 signature. TLlgLgLrRigHtVeredtpairgMInaVsfMV

Chain	Residue	Details
a	THR23-VAL55

site_id	PS00651
Number of Residues	28
Details	RIBOSOMAL_L9 Ribosomal protein L9 signature. GslGdqvnVkaGYarNFLvpqgkAvpaT

Chain	Residue	Details
H	GLY13-THR40

site_id	PS00701
Number of Residues	12
Details	RIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGkGKGnveyW

Chain	Residue	Details
N	ARG81-TRP92

site_id	PS00755
Number of Residues	20
Details	SECY_1 Protein secY signature 1. SIFaLGImPYIsASIIIQLL

Chain	Residue	Details
g	SER76-LEU95

site_id	PS00756
Number of Residues	18
Details	SECY_2 Protein secY signature 2. WLgEqITer.GIGNGiSII

Chain	Residue	Details
g	TRP173-ILE190

site_id	PS00783
Number of Residues	23
Details	RIBOSOMAL_L13 Ribosomal protein L13 signature. VKGMLPkgpl.GRamfrkLkVYaG

Chain	Residue	Details
K	VAL105-GLY127

site_id	PS00784
Number of Residues	20
Details	RIBOSOMAL_L34 Ribosomal protein L34 signature. KRTFQpsvlkRnrsh.GFraR

Chain	Residue	Details
d	LYS2-ARG21

site_id	PS00828
Number of Residues	27
Details	RIBOSOMAL_L36 Ribosomal protein L36 signature. CrnCkiVkRdgvIrViCsaepKHkQrQ

Chain	Residue	Details
f	CYS11-GLN37

site_id	PS00831
Number of Residues	15
Details	RIBOSOMAL_L27 Ribosomal protein L27 signature. GsIIvRQRGtkfhaG

Chain	Residue	Details
X	GLY34-GLY48

site_id	PS00936
Number of Residues	27
Details	RIBOSOMAL_L35 Ribosomal protein L35 signature. KTVrGAaKRFkktgkggfkhkhanl.RH

Chain	Residue	Details
e	LYS5-HIS31

site_id	PS00937
Number of Residues	17
Details	RIBOSOMAL_L20 Ribosomal protein L20 signature. KrqfRqLWIARINaaaR

Chain	Residue	Details
R	LYS54-ARG70

site_id	PS01015
Number of Residues	16
Details	RIBOSOMAL_L19 Ribosomal protein L19 signature. VkRrGAVR.KAKLYYLR

Chain	Residue	Details
Q	VAL86-ARG101

site_id	PS01067
Number of Residues	29
Details	SECE_SEC61G Protein secE/sec61-gamma signature. FaREaRteVrKviWPtrqEtlhttLIVAA

Chain	Residue	Details
h	PHE71-ALA99

site_id	PS01108
Number of Residues	18
Details	RIBOSOMAL_L24 Ribosomal protein L24 signature. DDeViVLtGkdKGkr.GkV

Chain	Residue	Details
V	ASP8-VAL25

site_id	PS01109
Number of Residues	35
Details	RIBOSOMAL_L10 Ribosomal protein L10 signature. KqaIvaeVSevakgalsaVvaDsrGVTVdKMteLR

Chain	Residue	Details
I	LYS8-ARG42

site_id	PS01167
Number of Residues	23
Details	RIBOSOMAL_L17 Ribosomal protein L17 signature. IkTTlpKaKelrrvvEpLITlAK

Chain	Residue	Details
O	ILE34-LYS56

site_id	PS01169
Number of Residues	23
Details	RIBOSOMAL_L21 Ribosomal protein L21 signature. VkivKfrrRKhyrkqqGHRQwfT

Chain	Residue	Details
S	VAL72-THR94

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	3
Details	BINDING: BINDING => ECO:0000255\|HAMAP-Rule:MF_00920

Chain	Residue	Details
l	GLY106
l	ASP188
l	THR252

site_id	SWS_FT_FI2
Number of Residues	26
Details	TRANSMEM: Helical => ECO:0000305

Chain	Residue	Details
j	ILE14-GLY25
j	PHE51-ILE66

site_id	SWS_FT_FI3
Number of Residues	24
Details	TOPO_DOM: Cytoplasmic => ECO:0000305\|PubMed:15919996

Chain	Residue	Details
j	LYS26-ASN50

site_id	SWS_FT_FI4
Number of Residues	9
Details	INTRAMEM: Helical; Name=Helix 2A => ECO:0000305

Chain	Residue	Details
g	ILE61-GLY70

site_id	SWS_FT_FI5
Number of Residues	5
Details	INTRAMEM: INTRAMEM => ECO:0000305

Chain	Residue	Details
g	ALA71-SER76

site_id	SWS_FT_FI6
Number of Residues	19
Details	INTRAMEM: Helical; Name=Helix 2B => ECO:0000305

Chain	Residue	Details
g	ILE77-THR96

site_id	SWS_FT_FI7
Number of Residues	107
Details	TOPO_DOM: Cytoplasmic => ECO:0000305

Chain	Residue	Details
g	VAL97-LYS115
g	THR179-ILE183
g	GLU238-GLY273
g	PHE330-TYR380

site_id	SWS_FT_FI8
Number of Residues	15
Details	TRANSMEM: Helical; Name=3 => ECO:0000305

Chain	Residue	Details
g	ILE116-GLN131

site_id	SWS_FT_FI9
Number of Residues	80
Details	TOPO_DOM: Periplasmic => ECO:0000305

Chain	Residue	Details
g	SER132-LEU164
g	PRO201-VAL223
g	ALA288-GLY313
g	LYS396

site_id	SWS_FT_FI10
Number of Residues	13
Details	TRANSMEM: Helical; Name=4 => ECO:0000305

Chain	Residue	Details
g	VAL165-ILE178

site_id	SWS_FT_FI11
Number of Residues	16
Details	TRANSMEM: Helical; Name=5 => ECO:0000305

Chain	Residue	Details
g	GLY184-PRO200

site_id	SWS_FT_FI12
Number of Residues	13
Details	TRANSMEM: Helical; Name=6 => ECO:0000305

Chain	Residue	Details
g	ALA224-VAL237

site_id	SWS_FT_FI13
Number of Residues	13
Details	TRANSMEM: Helical; Name=7 => ECO:0000305

Chain	Residue	Details
g	VAL274-PRO287

site_id	SWS_FT_FI14
Number of Residues	15
Details	TRANSMEM: Helical; Name=8 => ECO:0000305

Chain	Residue	Details
g	GLN314-CYS329

site_id	SWS_FT_FI15
Number of Residues	14
Details	TRANSMEM: Helical; Name=9 => ECO:0000305

Chain	Residue	Details
g	ILE381-MET395

site_id	SWS_FT_FI16
Number of Residues	16
Details	TRANSMEM: Helical; Name=10 => ECO:0000305

Chain	Residue	Details
g	VAL397-ILE413

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)