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5NBM

Crystal structure of the Arp4-N-actin(ATP-state) heterodimer bound by a nanobody

Functional Information from GO Data
ChainGOidnamespacecontents
A0000785cellular_componentchromatin
A0000812cellular_componentSwr1 complex
A0003682molecular_functionchromatin binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0006281biological_processDNA repair
A0006325biological_processchromatin organization
A0006338biological_processchromatin remodeling
A0006351biological_processDNA-templated transcription
A0006355biological_processregulation of DNA-templated transcription
A0006357biological_processregulation of transcription by RNA polymerase II
A0006974biological_processDNA damage response
A0016514cellular_componentSWI/SNF complex
A0031011cellular_componentIno80 complex
A0035267cellular_componentNuA4 histone acetyltransferase complex
A0042393molecular_functionhistone binding
A0043232cellular_componentintracellular non-membrane-bounded organelle
A0051382biological_processkinetochore assembly
B0000785cellular_componentchromatin
B0000812cellular_componentSwr1 complex
B0003682molecular_functionchromatin binding
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0006281biological_processDNA repair
B0006325biological_processchromatin organization
B0006338biological_processchromatin remodeling
B0006351biological_processDNA-templated transcription
B0006355biological_processregulation of DNA-templated transcription
B0006357biological_processregulation of transcription by RNA polymerase II
B0006974biological_processDNA damage response
B0016514cellular_componentSWI/SNF complex
B0031011cellular_componentIno80 complex
B0035267cellular_componentNuA4 histone acetyltransferase complex
B0042393molecular_functionhistone binding
B0043232cellular_componentintracellular non-membrane-bounded organelle
B0051382biological_processkinetochore assembly
C0000011biological_processvacuole inheritance
C0000142cellular_componentcellular bud neck contractile ring
C0000166molecular_functionnucleotide binding
C0000785cellular_componentchromatin
C0000812cellular_componentSwr1 complex
C0005200molecular_functionstructural constituent of cytoskeleton
C0005515molecular_functionprotein binding
C0005524molecular_functionATP binding
C0005634cellular_componentnucleus
C0005737cellular_componentcytoplasm
C0005856cellular_componentcytoskeleton
C0005884cellular_componentactin filament
C0006281biological_processDNA repair
C0006338biological_processchromatin remodeling
C0006351biological_processDNA-templated transcription
C0006355biological_processregulation of DNA-templated transcription
C0006897biological_processendocytosis
C0009306biological_processprotein secretion
C0016787molecular_functionhydrolase activity
C0030010biological_processestablishment of cell polarity
C0030476biological_processascospore wall assembly
C0030479cellular_componentactin cortical patch
C0031011cellular_componentIno80 complex
C0032432cellular_componentactin filament bundle
C0035267cellular_componentNuA4 histone acetyltransferase complex
C0042802molecular_functionidentical protein binding
C0043232cellular_componentintracellular non-membrane-bounded organelle
C1902404biological_processmitotic actomyosin contractile ring contraction
D0000011biological_processvacuole inheritance
D0000142cellular_componentcellular bud neck contractile ring
D0000166molecular_functionnucleotide binding
D0000785cellular_componentchromatin
D0000812cellular_componentSwr1 complex
D0005200molecular_functionstructural constituent of cytoskeleton
D0005515molecular_functionprotein binding
D0005524molecular_functionATP binding
D0005634cellular_componentnucleus
D0005737cellular_componentcytoplasm
D0005856cellular_componentcytoskeleton
D0005884cellular_componentactin filament
D0006281biological_processDNA repair
D0006338biological_processchromatin remodeling
D0006351biological_processDNA-templated transcription
D0006355biological_processregulation of DNA-templated transcription
D0006897biological_processendocytosis
D0009306biological_processprotein secretion
D0016787molecular_functionhydrolase activity
D0030010biological_processestablishment of cell polarity
D0030476biological_processascospore wall assembly
D0030479cellular_componentactin cortical patch
D0031011cellular_componentIno80 complex
D0032432cellular_componentactin filament bundle
D0035267cellular_componentNuA4 histone acetyltransferase complex
D0042802molecular_functionidentical protein binding
D0043232cellular_componentintracellular non-membrane-bounded organelle
D1902404biological_processmitotic actomyosin contractile ring contraction
Functional Information from PDB Data
site_idAC1
Number of Residues2
Detailsbinding site for residue CA A 501
ChainResidue
AASP159
AATP502

site_idAC2
Number of Residues14
Detailsbinding site for residue ATP A 502
ChainResidue
AGLN240
ALYS243
AGLY412
AGLY413
ATHR414
AGLN449
ACA501
AGLY22
ASER23
ATYR24
ATHR25
AGLY161
AHIS162
AASP163

site_idAC3
Number of Residues2
Detailsbinding site for residue CA B 501
ChainResidue
BASP159
BATP502

site_idAC4
Number of Residues15
Detailsbinding site for residue ATP B 502
ChainResidue
BGLY22
BSER23
BTYR24
BTHR25
BHIS162
BASP163
BTHR164
BGLN240
BLYS243
BGLY412
BGLY413
BTHR414
BILE417
BGLN449
BCA501

site_idAC5
Number of Residues2
Detailsbinding site for residue CA C 501
ChainResidue
CGLN137
CATP502

site_idAC6
Number of Residues19
Detailsbinding site for residue ATP C 502
ChainResidue
CGLY13
CSER14
CGLY15
CMET16
CLYS18
CGLY156
CASP157
CGLY158
CVAL159
CARG210
CLYS213
CGLU214
CGLY301
CGLY302
CTHR303
CMET305
CPHE306
CLYS336
CCA501

site_idAC7
Number of Residues2
Detailsbinding site for residue CA D 501
ChainResidue
DGLN137
DATP502

site_idAC8
Number of Residues19
Detailsbinding site for residue ATP D 502
ChainResidue
DGLY13
DSER14
DGLY15
DMET16
DLYS18
DGLY156
DASP157
DGLY158
DVAL159
DARG210
DLYS213
DGLU214
DGLY301
DGLY302
DTHR303
DMET305
DPHE306
DLYS336
DCA501

Functional Information from PROSITE/UniProt
site_idPS00406
Number of Residues11
DetailsACTINS_1 Actins signature 1. YVGDEAQs.KRG
ChainResidueDetails
CTYR53-GLY63

site_idPS00432
Number of Residues9
DetailsACTINS_2 Actins signature 2. WISKqEYDE
ChainResidueDetails
CTRP356-GLU364

site_idPS01132
Number of Residues13
DetailsACTINS_ACT_LIKE Actins and actin-related proteins signature. LLTEPvWNSteNR
ChainResidueDetails
ALEU109-ARG121
CLEU104-ARG116

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsSITE: Not methylated => ECO:0000269|PubMed:10496983
ChainResidueDetails
CHIC73
DHIC73

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: N-acetylmethionine => ECO:0000269|PubMed:1885608, ECO:0007744|PubMed:22814378
ChainResidueDetails
CMET1
DMET1

site_idSWS_FT_FI3
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047
ChainResidueDetails
CLYS191
DLYS191

217705

PDB entries from 2024-03-27

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