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5N7Q

CRYSTAL STRUCTURE OF MATURE CATHEPSIN D FROM THE TICK IXODES RICINUS (IRCD1) IN COMPLEX WITH THE INHIBITOR PEPSTATIN A

Functional Information from GO Data
ChainGOidnamespacecontents
A0004190molecular_functionaspartic-type endopeptidase activity
A0006508biological_processproteolysis
B0004190molecular_functionaspartic-type endopeptidase activity
B0006508biological_processproteolysis
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue PEG A 401
ChainResidue
AASN83
AHOH652
AHOH659
AHOH766
AHOH772
AHOH796

site_idAC2
Number of Residues7
Detailsbinding site for residue GOL B 401
ChainResidue
BHOH523
BHOH600
BHOH885
BHOH948
BTYR322
BGLU337
BHOH507

site_idAC3
Number of Residues12
Detailsbinding site for Di-peptide IVA I 501 and VAL I 502
ChainResidue
AVAL16
ASER81
AGLY229
ATHR230
ASER231
ALEU232
AGLN256
AHOH539
IVAL503
ISTA504
IHOH606
IHOH607

site_idAC4
Number of Residues12
Detailsbinding site for Di-peptide VAL I 503 and STA I 504
ChainResidue
AILE34
AASP36
AGLY38
ATYR79
AGLY80
ASER81
AASP227
AGLY229
ATHR230
IIVA501
IVAL502
IALA505

site_idAC5
Number of Residues15
Detailsbinding site for Di-peptide STA I 504 and ALA I 505
ChainResidue
AILE34
AASP36
AGLY38
ASER39
AVAL78
ATYR79
AGLY80
ATYR196
AASP227
AGLY229
ATHR230
IVAL502
IVAL503
ISTA506
IHOH608

site_idAC6
Number of Residues13
Detailsbinding site for Di-peptide ALA I 505 and STA I 506
ChainResidue
AGLY38
ASER39
AVAL78
ATYR79
AGLY80
ATYR196
ISTA504
IHOH601
IHOH602
IHOH603
IHOH604
IHOH605
IHOH608

site_idAC7
Number of Residues9
Detailsbinding site for Di-peptide IVA J 501 and VAL J 502
ChainResidue
BSER81
BGLY229
BTHR230
BSER231
BGLN256
BHOH528
BHOH581
JVAL503
JHOH601

site_idAC8
Number of Residues12
Detailsbinding site for Di-peptide VAL J 503 and STA J 504
ChainResidue
BILE34
BASP36
BGLY38
BTYR79
BGLY80
BSER81
BASP227
BGLY229
BTHR230
JVAL502
JALA505
JSTA506

site_idAC9
Number of Residues14
Detailsbinding site for Di-peptide STA J 504 and ALA J 505
ChainResidue
JHOH603
BILE34
BASP36
BGLY38
BSER39
BVAL78
BTYR79
BGLY80
BTYR196
BASP227
BGLY229
BTHR230
JVAL503
JSTA506

site_idAD1
Number of Residues9
Detailsbinding site for Di-peptide ALA J 505 and STA J 506
ChainResidue
BGLY38
BSER39
BVAL78
BGLY80
BTYR196
JSTA504
JHOH602
JHOH603
JHOH604

Functional Information from PROSITE/UniProt
site_idPS00141
Number of Residues12
DetailsASP_PROTEASE Eukaryotic and viral aspartyl proteases active site. VIFDTGSANLWL
ChainResidueDetails
AVAL33-LEU44
AALA224-GLY235

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PDB entries from 2024-10-16

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