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5N0H

Crystal structure of NDM-1 in complex with hydrolyzed meropenem - new refinement

Functional Information from GO Data
ChainGOidnamespacecontents
A0008270molecular_functionzinc ion binding
A0008800molecular_functionbeta-lactamase activity
A0016787molecular_functionhydrolase activity
A0017001biological_processantibiotic catabolic process
A0042597cellular_componentperiplasmic space
A0046677biological_processresponse to antibiotic
A0046872molecular_functionmetal ion binding
B0008270molecular_functionzinc ion binding
B0008800molecular_functionbeta-lactamase activity
B0016787molecular_functionhydrolase activity
B0017001biological_processantibiotic catabolic process
B0042597cellular_componentperiplasmic space
B0046677biological_processresponse to antibiotic
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues14
Detailsbinding site for residue 8YL A 301
ChainResidue
AVAL73
AZN303
AHOH441
AHOH535
AHOH558
AHOH592
AHIS122
AASP124
AHIS189
ACYS208
ALYS211
AASN220
AHIS250
AZN302

site_idAC2
Number of Residues5
Detailsbinding site for residue ZN A 302
ChainResidue
AASP124
ACYS208
AHIS250
A8YL301
AHOH535

site_idAC3
Number of Residues5
Detailsbinding site for residue ZN A 303
ChainResidue
AHIS120
AHIS122
AHIS189
A8YL301
AHOH535

site_idAC4
Number of Residues5
Detailsbinding site for residue GOL A 304
ChainResidue
AARG234
AALA263
AARG264
AHOH406
AHOH423

site_idAC5
Number of Residues9
Detailsbinding site for residue GOL A 305
ChainResidue
AGLY197
AILE198
ATHR201
AASP202
AILE203
APHE240
ALYS242
AALA243
AHOH528

site_idAC6
Number of Residues8
Detailsbinding site for residue SO4 A 306
ChainResidue
AILE109
AASN110
AHOH403
BGLY42
BARG52
BGLN53
BGOL303
BHOH515

site_idAC7
Number of Residues5
Detailsbinding site for residue ZN B 301
ChainResidue
BASP124
BCYS208
BHIS250
BHOH534
BHOH542

site_idAC8
Number of Residues5
Detailsbinding site for residue ZN B 302
ChainResidue
BHIS120
BHIS122
BHIS189
BHOH528
BHOH542

site_idAC9
Number of Residues7
Detailsbinding site for residue GOL B 303
ChainResidue
AARG81
AILE109
ASO4306
AHOH471
BARG52
BLEU54
BHOH405

site_idAD1
Number of Residues5
Detailsbinding site for residue GOL B 304
ChainResidue
BILE198
BTHR201
BILE203
BLYS242
BALA243

site_idAD2
Number of Residues2
Detailsbinding site for residue GOL B 305
ChainResidue
BGLN53
BTRP59

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"22713171","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25815530","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"22713171","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

239492

PDB entries from 2025-07-30

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