Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5MU6

Human N-myristoyltransferase (NMT1) with Myristoyl-CoA and IMP-1088 inhibitor bound

Functional Information from GO Data
ChainGOidnamespacecontents
A0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
A0006499biological_processN-terminal protein myristoylation
B0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
B0006499biological_processN-terminal protein myristoylation
Functional Information from PDB Data
site_idAC1
Number of Residues28
Detailsbinding site for residue MYA A 501
ChainResidue
ATYR117
AVAL250
AARG255
ASER256
AARG258
AVAL259
AALA260
APRO261
ATHR268
APHE277
ATHR282
AGLN118
ALEU287
ATYR479
AMG502
AHOH622
AHOH665
AHOH693
AHOH726
AHOH756
AHOH758
APHE119
ATRP120
ATYR180
AVAL181
APHE247
ALEU248
ACYS249

site_idAC2
Number of Residues7
Detailsbinding site for residue MG A 502
ChainResidue
ALEU254
AARG255
ASER256
ALYS257
AARG258
AVAL259
AMYA501

site_idAC3
Number of Residues7
Detailsbinding site for residue GOL A 503
ChainResidue
ALYS289
APRO290
AVAL291
ALEU478
ATRP481
ALYS482
ACYS483

site_idAC4
Number of Residues5
Detailsbinding site for residue GOL A 504
ChainResidue
AGLU244
ATRP374
ATYR423
AVAL494
AGLN496

site_idAC5
Number of Residues13
Detailsbinding site for residue KFK A 505
ChainResidue
AVAL181
APHE188
APHE190
AASN246
ATHR282
ATYR296
AHIS298
ASER405
ATYR420
AASN451
AALA452
ALEU495
AGLN496

site_idAC6
Number of Residues31
Detailsbinding site for residue MYA B 501
ChainResidue
BARG115
BTYR117
BGLN118
BPHE119
BTRP120
BTYR180
BVAL181
BILE245
BPHE247
BLEU248
BCYS249
BVAL250
BARG255
BSER256
BLYS257
BARG258
BVAL259
BALA260
BPRO261
BTHR268
BPHE277
BALA279
BTYR281
BTHR282
BLEU287
BMG502
BHOH642
BHOH661
BHOH695
BHOH723
BHOH729

site_idAC7
Number of Residues6
Detailsbinding site for residue MG B 502
ChainResidue
BLEU254
BSER256
BLYS257
BARG258
BVAL259
BMYA501

site_idAC8
Number of Residues7
Detailsbinding site for residue GOL B 503
ChainResidue
BLEU478
BTRP481
BLYS482
BCYS483
BHOH614
BPRO126
BLYS289

site_idAC9
Number of Residues6
Detailsbinding site for residue GOL B 504
ChainResidue
BGLU244
BTRP374
BTYR423
BVAL494
BGLN496
BHOH635

site_idAD1
Number of Residues14
Detailsbinding site for residue KFK B 505
ChainResidue
BVAL181
BPHE188
BARG189
BPHE190
BASN246
BTHR282
BTYR296
BHIS298
BSER405
BTYR420
BASN451
BALA452
BLEU495
BGLN496

Functional Information from PROSITE/UniProt
site_idPS00975
Number of Residues9
DetailsNMT_1 Myristoyl-CoA:protein N-myristoyltransferase signature 1. EINFLCvHK
ChainResidueDetails
AGLU244-LYS252

site_idPS00976
Number of Residues7
DetailsNMT_2 Myristoyl-CoA:protein N-myristoyltransferase signature 2. KFGiGDG
ChainResidueDetails
ALYS466-GLY472

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:25255805, ECO:0000269|PubMed:32111831, ECO:0000269|Ref.19
ChainResidueDetails
AARG339
APRO340
BLEU198
BLEU338
BARG339
BPRO340
ALEU338
ALEU198

site_idSWS_FT_FI2
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:25255805, ECO:0000269|PubMed:32103017, ECO:0000269|PubMed:32111831, ECO:0000269|Ref.19
ChainResidueDetails
AARG328
APRO330
AALA336
BTRP199
BALA200
BARG328
BPRO330
BALA336
ATRP199
AALA200

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:32103017
ChainResidueDetails
ATYR327
BTYR327

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25255805, ECO:0000269|Ref.19
ChainResidueDetails
ALEU329
BLEU329

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:O70310
ChainResidueDetails
AGLU111
BGLU111

site_idSWS_FT_FI6
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:16964243, ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569
ChainResidueDetails
ALYS127
BLYS127

site_idSWS_FT_FI7
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ALEU163
BLEU163

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon