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5MMB

Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI XZ434 (compound 6p)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0015074biological_processDNA integration
B0003676molecular_functionnucleic acid binding
B0015074biological_processDNA integration
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
AHIS62
AHIS66
ACYS96
ACYS99

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 402
ChainResidue
AASP128
AASP185
AOUY417
AHOH524
DHOH109

site_idAC3
Number of Residues5
Detailsbinding site for residue MG A 403
ChainResidue
AASP128
AGLU221
AASN224
AOUY417
DHOH103

site_idAC4
Number of Residues3
Detailsbinding site for residue SO4 A 404
ChainResidue
ASER136
AGLN137
ALYS241

site_idAC5
Number of Residues2
Detailsbinding site for residue SO4 A 405
ChainResidue
AALA188
AOUY417

site_idAC6
Number of Residues6
Detailsbinding site for residue SO4 A 406
ChainResidue
ALYS228
ASER332
ALEU333
AARG336
AHOH501
AHOH502

site_idAC7
Number of Residues3
Detailsbinding site for residue SO4 A 407
ChainResidue
AHIS338
ALYS339
AHIS357

site_idAC8
Number of Residues2
Detailsbinding site for residue SO4 A 408
ChainResidue
ALYS159
AALA165

site_idAC9
Number of Residues4
Detailsbinding site for residue SO4 A 409
ChainResidue
AGLN60
ATYR80
APHE278
AHOH532

site_idAD1
Number of Residues4
Detailsbinding site for residue SO4 A 410
ChainResidue
AASN171
ATHR174
AARG202
BPRO247

site_idAD2
Number of Residues5
Detailsbinding site for residue SO4 A 411
ChainResidue
AARG114
ATYR303
APRO305
CDC6
CGOL101

site_idAD3
Number of Residues3
Detailsbinding site for residue GOL A 412
ChainResidue
ASER162
ATHR163
ASER164

site_idAD4
Number of Residues2
Detailsbinding site for residue GOL A 413
ChainResidue
AASP116
CDT3

site_idAD5
Number of Residues4
Detailsbinding site for residue GOL A 414
ChainResidue
AHIS19
ATYR20
BTHR210
BHIS213

site_idAD6
Number of Residues5
Detailsbinding site for residue GOL A 415
ChainResidue
ASER225
ATHR232
AARG334
AHOH522
DDC16

site_idAD7
Number of Residues5
Detailsbinding site for residue GOL A 416
ChainResidue
ALEU292
AGLN296
BTYR263
BGLY271
BASP273

site_idAD8
Number of Residues17
Detailsbinding site for residue OUY A 417
ChainResidue
AASP128
AASP185
AGLN186
ATYR212
APRO214
AGLN215
AGLU221
AARG329
AMG402
AMG403
ASO4405
AHOH503
AHOH508
CDG4
DDC16
DDA17
DHOH109

site_idAD9
Number of Residues5
Detailsbinding site for residue HEZ A 418
ChainResidue
ATRP315
ATHR372
AHIS374
AGLN375
CDG10

site_idAE1
Number of Residues6
Detailsbinding site for residue HEZ A 419
ChainResidue
ATYR257
ALYS262
AGLN267
AGLY271
AASN280
AILE298

site_idAE2
Number of Residues3
Detailsbinding site for residue MG B 401
ChainResidue
BASP128
BASP185
CDA19

site_idAE3
Number of Residues5
Detailsbinding site for residue SO4 B 402
ChainResidue
BLYS219
BARG222
BSER258
BPRO259
BVAL260

site_idAE4
Number of Residues1
Detailsbinding site for residue GOL B 403
ChainResidue
BGLY218

site_idAE5
Number of Residues5
Detailsbinding site for residue HEZ B 404
ChainResidue
ASER175
BLEU155
BTYR156
BTYR243
BGLN250

site_idAE6
Number of Residues6
Detailsbinding site for residue GOL C 101
ChainResidue
AVAL260
ASO4411
CDC6
CDA7
CDT8
DDC11

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP123
AASP185
BASP123
BASP185

219140

PDB entries from 2024-05-01

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