5MI8
Structure of the phosphomimetic mutant of EF-Tu T383E
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0003723 | molecular_function | RNA binding |
| A | 0003746 | molecular_function | translation elongation factor activity |
| A | 0003924 | molecular_function | GTPase activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0005525 | molecular_function | GTP binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005886 | cellular_component | plasma membrane |
| A | 0006412 | biological_process | translation |
| A | 0006414 | biological_process | translational elongation |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0032045 | cellular_component | guanyl-nucleotide exchange factor complex |
| A | 0046677 | biological_process | response to antibiotic |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0097216 | molecular_function | guanosine tetraphosphate binding |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0003723 | molecular_function | RNA binding |
| B | 0003746 | molecular_function | translation elongation factor activity |
| B | 0003924 | molecular_function | GTPase activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0005525 | molecular_function | GTP binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005886 | cellular_component | plasma membrane |
| B | 0006412 | biological_process | translation |
| B | 0006414 | biological_process | translational elongation |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0032045 | cellular_component | guanyl-nucleotide exchange factor complex |
| B | 0046677 | biological_process | response to antibiotic |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0097216 | molecular_function | guanosine tetraphosphate binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | binding site for residue MG A 401 |
| Chain | Residue |
| A | THR26 |
| A | GDP403 |
| A | HOH507 |
| A | HOH513 |
| A | HOH528 |
| A | HOH535 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue MG A 402 |
| Chain | Residue |
| A | HOH530 |
| B | GLU286 |
| A | ASP355 |
| A | HOH503 |
| A | HOH520 |
| site_id | AC3 |
| Number of Residues | 18 |
| Details | binding site for residue GDP A 403 |
| Chain | Residue |
| A | ASP22 |
| A | HIS23 |
| A | GLY24 |
| A | LYS25 |
| A | THR26 |
| A | THR27 |
| A | PHE47 |
| A | ASN136 |
| A | LYS137 |
| A | ASP139 |
| A | SER174 |
| A | ALA175 |
| A | LEU176 |
| A | MG401 |
| A | HOH507 |
| A | HOH513 |
| A | HOH525 |
| A | HOH528 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | binding site for residue ACT A 404 |
| Chain | Residue |
| A | ARG124 |
| A | GLY127 |
| A | PRO129 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | binding site for residue ACT A 405 |
| Chain | Residue |
| A | MET113 |
| A | PRO114 |
| A | ARG117 |
| A | ARG263 |
| A | LYS264 |
| A | LEU265 |
| site_id | AC6 |
| Number of Residues | 1 |
| Details | binding site for residue ACT A 406 |
| Chain | Residue |
| A | ASP208 |
| site_id | AC7 |
| Number of Residues | 8 |
| Details | binding site for residue EPE A 407 |
| Chain | Residue |
| A | LEU266 |
| A | ASP267 |
| A | GLU268 |
| A | GLY269 |
| A | ARG270 |
| A | GLU273 |
| A | HOH504 |
| A | HOH531 |
| site_id | AC8 |
| Number of Residues | 2 |
| Details | binding site for residue BME A 408 |
| Chain | Residue |
| A | ARG289 |
| B | LYS264 |
| site_id | AC9 |
| Number of Residues | 3 |
| Details | binding site for residue BME A 409 |
| Chain | Residue |
| A | ASP162 |
| B | ASP110 |
| B | PRO112 |
| site_id | AD1 |
| Number of Residues | 6 |
| Details | binding site for residue MG B 401 |
| Chain | Residue |
| B | THR26 |
| B | GDP403 |
| B | HOH502 |
| B | HOH503 |
| B | HOH506 |
| B | HOH539 |
| site_id | AD2 |
| Number of Residues | 6 |
| Details | binding site for residue MG B 402 |
| Chain | Residue |
| A | HOH518 |
| A | HOH522 |
| A | HOH524 |
| A | HOH569 |
| B | HOH519 |
| B | HOH521 |
| site_id | AD3 |
| Number of Residues | 18 |
| Details | binding site for residue GDP B 403 |
| Chain | Residue |
| B | ASP22 |
| B | HIS23 |
| B | GLY24 |
| B | LYS25 |
| B | THR26 |
| B | THR27 |
| B | PHE47 |
| B | ASN136 |
| B | LYS137 |
| B | ASP139 |
| B | MET140 |
| B | SER174 |
| B | ALA175 |
| B | LEU176 |
| B | MG401 |
| B | HOH502 |
| B | HOH503 |
| B | HOH506 |
| site_id | AD4 |
| Number of Residues | 3 |
| Details | binding site for residue ACT B 404 |
| Chain | Residue |
| B | GLY84 |
| B | HIS85 |
| B | GLN115 |
| site_id | AD5 |
| Number of Residues | 5 |
| Details | binding site for residue EPE B 405 |
| Chain | Residue |
| B | GLU268 |
| B | ARG270 |
| B | GLU273 |
| B | HOH513 |
| B | HOH523 |
| site_id | AD6 |
| Number of Residues | 4 |
| Details | binding site for residue CL B 406 |
| Chain | Residue |
| B | THR72 |
| B | PRO73 |
| B | THR74 |
| B | ASP197 |
Functional Information from PROSITE/UniProt
| site_id | PS00301 |
| Number of Residues | 16 |
| Details | G_TR_1 Translational (tr)-type guanine nucleotide-binding (G) domain signature. DNapeEKaRGITIntS |
| Chain | Residue | Details |
| A | ASP51-SER66 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 194 |
| Details | Domain: {"description":"tr-type G"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 14 |
| Details | Region: {"description":"G1","evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 8 |
| Details | Region: {"description":"G2","evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 6 |
| Details | Region: {"description":"G3","evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 6 |
| Details | Region: {"description":"G4","evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 4 |
| Details | Region: {"description":"G5","evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 28 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00118","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"29546243","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5MI3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5OPD","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI9 |
| Number of Residues | 18 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"29546243","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5OPD","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI10 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"PubMed","id":"2022614","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"389663","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"6997043","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"7021545","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI11 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"18723842","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI12 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"19150849","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24141193","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"8416965","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
Catalytic Information from CSA
| site_id | MCSA1 |
| Number of Residues | 4 |
| Details | M-CSA 535 |
| Chain | Residue | Details |
| A | ASP22 | electrostatic stabiliser |
| A | LYS25 | electrostatic stabiliser |
| A | THR26 | metal ligand |
| A | HIS85 | electrostatic stabiliser |
| site_id | MCSA2 |
| Number of Residues | 4 |
| Details | M-CSA 535 |
| Chain | Residue | Details |
| B | ASP22 | electrostatic stabiliser |
| B | LYS25 | electrostatic stabiliser |
| B | THR26 | metal ligand |
| B | HIS85 | electrostatic stabiliser |
