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5MH5

D-2-hydroxyacid dehydrogenases (D2-HDH) from Haloferax mediterranei in complex with 2-keto-hexanoic acid and NADP+ (1.4 A resolution)

Functional Information from GO Data
ChainGOidnamespacecontents
A0016491molecular_functionoxidoreductase activity
A0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
A0019752biological_processcarboxylic acid metabolic process
A0031406molecular_functioncarboxylic acid binding
A0051287molecular_functionNAD binding
A0070402molecular_functionNADPH binding
A0070404molecular_functionNADH binding
B0016491molecular_functionoxidoreductase activity
B0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
B0019752biological_processcarboxylic acid metabolic process
B0031406molecular_functioncarboxylic acid binding
B0051287molecular_functionNAD binding
B0070402molecular_functionNADPH binding
B0070404molecular_functionNADH binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue MG A 401
ChainResidue
AHOH659
AHOH734
BGLU211
BHOH557
BHOH584
BHOH733

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 402
ChainResidue
AHOH806
AHOH814
AHOH827
AHOH562
AHOH569
AHOH582

site_idAC3
Number of Residues5
Detailsbinding site for residue MG A 403
ChainResidue
AHOH546
AHOH710
AHOH747
AHOH794
AHOH811

site_idAC4
Number of Residues4
Detailsbinding site for residue MG A 404
ChainResidue
ATHR132
AALA134
AHOH594
AHOH630

site_idAC5
Number of Residues4
Detailsbinding site for residue MG A 405
ChainResidue
AGLU202
AHOH631
AHOH659
BPRO180

site_idAC6
Number of Residues4
Detailsbinding site for residue MG A 406
ChainResidue
AHOH537
AHOH781
AHOH818
AHOH829

site_idAC7
Number of Residues4
Detailsbinding site for residue MG A 407
ChainResidue
AGLU302
AHOH502
AHOH722
AHOH762

site_idAC8
Number of Residues4
Detailsbinding site for residue MG A 408
ChainResidue
AASP172
AHOH538
AHOH676
AHOH799

site_idAC9
Number of Residues6
Detailsbinding site for residue MG A 409
ChainResidue
AGLU211
AHOH540
AHOH613
BHOH565
BHOH657
BHOH762

site_idAD1
Number of Residues5
Detailsbinding site for residue MG A 410
ChainResidue
APHE212
AGLU213
AMET215
AASP243
AHOH745

site_idAD2
Number of Residues6
Detailsbinding site for residue MG A 416
ChainResidue
AHIS120
AHOH530
AHOH713
BASP265
BHOH532
BHOH663

site_idAD3
Number of Residues6
Detailsbinding site for residue MG A 411
ChainResidue
AHOH554
AHOH757
AHOH776
AHOH797
AHOH802
AHOH828

site_idAD4
Number of Residues4
Detailsbinding site for residue MG A 412
ChainResidue
AHOH528
AHOH584
AHOH615
AHOH826

site_idAD5
Number of Residues8
Detailsbinding site for residue 7N5 A 413
ChainResidue
AARG66
AALA67
AGLY68
AHIS91
AARG226
AHIS274
AALA277
ANAP414

site_idAD6
Number of Residues39
Detailsbinding site for residue NAP A 414
ChainResidue
AHOH564
AHOH569
AHOH574
AHOH582
AHOH624
AHOH643
AHOH646
AHOH671
AHOH679
AHOH694
AHOH711
AHOH727
AALA67
AGLY68
ATHR88
AGLY142
ALEU143
AGLY144
ATHR145
ALEU146
AARG165
AARG166
ASER167
APRO180
AALA196
ATHR197
APRO198
ATHR203
AVAL224
AALA225
AARG226
AASP250
AHIS274
ASER276
A7N5413
AHOH505
AHOH548
AHOH560
AHOH562

site_idAD7
Number of Residues5
Detailsbinding site for residue SO4 A 415
ChainResidue
AARG148
AARG165
AHOH517
AHOH531
AHOH561

site_idAD8
Number of Residues4
Detailsbinding site for residue MG B 402
ChainResidue
BHOH548
BHOH602
BHOH631
BHOH808

site_idAD9
Number of Residues4
Detailsbinding site for residue MG B 403
ChainResidue
AASP201
BTHR214
BHOH526
BHOH651

site_idAE1
Number of Residues5
Detailsbinding site for residue MG B 404
ChainResidue
BVAL177
BHOH624
BHOH625
BHOH728
BHOH782

site_idAE2
Number of Residues5
Detailsbinding site for residue MG B 401
ChainResidue
AASP265
AHOH645
AHOH703
BHIS120
BHOH516

site_idAE3
Number of Residues5
Detailsbinding site for residue MG B 405
ChainResidue
BPHE212
BGLU213
BMET215
BASP243
BHOH768

site_idAE4
Number of Residues4
Detailsbinding site for residue MG B 406
ChainResidue
BTHR132
BALA134
BHOH571
BHOH724

site_idAE5
Number of Residues6
Detailsbinding site for residue MG B 407
ChainResidue
BHOH511
BHOH535
BHOH586
BHOH677
BHOH778
BHOH821

site_idAE6
Number of Residues6
Detailsbinding site for residue MG B 408
ChainResidue
BHOH506
BHOH524
BHOH701
BHOH804
BHOH820
BHOH823

site_idAE7
Number of Residues9
Detailsbinding site for residue 7N5 B 409
ChainResidue
BARG66
BALA67
BGLY68
BHIS91
BARG226
BHIS274
BTYR282
BNAP410
BHOH514

site_idAE8
Number of Residues39
Detailsbinding site for residue NAP B 410
ChainResidue
BALA67
BGLY68
BTHR88
BLEU143
BGLY144
BTHR145
BLEU146
BARG165
BARG166
BSER167
BPRO180
BALA196
BTHR197
BPRO198
BTHR203
BVAL224
BALA225
BARG226
BASP250
BVAL251
BHIS274
BSER276
B7N5409
BHOH501
BHOH548
BHOH560
BHOH587
BHOH590
BHOH602
BHOH612
BHOH631
BHOH650
BHOH653
BHOH655
BHOH664
BHOH706
BHOH721
BHOH736
BHOH740

site_idAE9
Number of Residues4
Detailsbinding site for residue SO4 B 411
ChainResidue
BARG148
BARG165
BHOH505
BHOH570

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: ACT_SITE => ECO:0000250
ChainResidueDetails
AARG226
AGLU255
BARG226
BGLU255

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000250
ChainResidueDetails
AHIS274
BHIS274

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P0A9T0
ChainResidueDetails
ATHR145
AVAL224
AASP250
AHIS274
BTHR145
BVAL224
BASP250
BHIS274

222415

PDB entries from 2024-07-10

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