5M73
Structure of the human SRP S domain with SRP72 RNA-binding domain
Functional Information from GO Data
Chain | GOid | namespace | contents |
B | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
B | 0008312 | molecular_function | 7S RNA binding |
B | 0048500 | cellular_component | signal recognition particle |
C | 0003723 | molecular_function | RNA binding |
C | 0005047 | molecular_function | signal recognition particle binding |
C | 0005786 | cellular_component | signal recognition particle, endoplasmic reticulum targeting |
C | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
C | 0008312 | molecular_function | 7S RNA binding |
C | 0030942 | molecular_function | endoplasmic reticulum signal peptide binding |
D | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
D | 0008312 | molecular_function | 7S RNA binding |
D | 0048500 | cellular_component | signal recognition particle |
F | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
F | 0008312 | molecular_function | 7S RNA binding |
F | 0048500 | cellular_component | signal recognition particle |
G | 0003723 | molecular_function | RNA binding |
G | 0005047 | molecular_function | signal recognition particle binding |
G | 0005786 | cellular_component | signal recognition particle, endoplasmic reticulum targeting |
G | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
G | 0008312 | molecular_function | 7S RNA binding |
G | 0030942 | molecular_function | endoplasmic reticulum signal peptide binding |
H | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
H | 0008312 | molecular_function | 7S RNA binding |
H | 0048500 | cellular_component | signal recognition particle |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | binding site for residue MG A 301 |
Chain | Residue |
A | G194 |
A | U195 |
A | G204 |
A | K328 |
site_id | AC2 |
Number of Residues | 2 |
Details | binding site for residue MG A 302 |
Chain | Residue |
A | U132 |
A | G164 |
site_id | AC3 |
Number of Residues | 2 |
Details | binding site for residue MG A 303 |
Chain | Residue |
A | G238 |
A | G239 |
site_id | AC4 |
Number of Residues | 1 |
Details | binding site for residue MG A 304 |
Chain | Residue |
A | U241 |
site_id | AC5 |
Number of Residues | 2 |
Details | binding site for residue MG A 305 |
Chain | Residue |
A | G177 |
A | G178 |
site_id | AC6 |
Number of Residues | 2 |
Details | binding site for residue MG A 309 |
Chain | Residue |
A | C196 |
A | G198 |
site_id | AC7 |
Number of Residues | 1 |
Details | binding site for residue MG A 310 |
Chain | Residue |
A | G198 |
site_id | AC8 |
Number of Residues | 1 |
Details | binding site for residue MG A 311 |
Chain | Residue |
A | G175 |
site_id | AC9 |
Number of Residues | 1 |
Details | binding site for residue MG A 312 |
Chain | Residue |
A | G152 |
site_id | AD1 |
Number of Residues | 2 |
Details | binding site for residue MG A 314 |
Chain | Residue |
A | G168 |
C | SER157 |
site_id | AD2 |
Number of Residues | 1 |
Details | binding site for residue MG A 315 |
Chain | Residue |
A | G238 |
site_id | AD3 |
Number of Residues | 2 |
Details | binding site for residue MG A 316 |
Chain | Residue |
A | C129 |
A | A130 |
site_id | AD4 |
Number of Residues | 2 |
Details | binding site for residue MG A 317 |
Chain | Residue |
A | G237 |
A | G238 |
site_id | AD5 |
Number of Residues | 3 |
Details | binding site for residue MG A 318 |
Chain | Residue |
A | G209 |
A | G210 |
A | K332 |
site_id | AD6 |
Number of Residues | 1 |
Details | binding site for residue MG A 319 |
Chain | Residue |
A | C220 |
site_id | AD7 |
Number of Residues | 1 |
Details | binding site for residue MG A 320 |
Chain | Residue |
A | A184 |
site_id | AD8 |
Number of Residues | 1 |
Details | binding site for residue MG A 321 |
Chain | Residue |
A | C111 |
site_id | AD9 |
Number of Residues | 1 |
Details | binding site for residue MG A 322 |
Chain | Residue |
A | U132 |
site_id | AE1 |
Number of Residues | 1 |
Details | binding site for residue MG A 324 |
Chain | Residue |
A | GOL333 |
site_id | AE2 |
Number of Residues | 1 |
Details | binding site for residue MG A 325 |
Chain | Residue |
A | G210 |
site_id | AE3 |
Number of Residues | 4 |
Details | binding site for residue K A 328 |
Chain | Residue |
A | G193 |
A | G194 |
A | U195 |
A | MG301 |
site_id | AE4 |
Number of Residues | 5 |
Details | binding site for residue K A 329 |
Chain | Residue |
A | G109 |
A | U110 |
A | U241 |
A | G243 |
A | C244 |
site_id | AE5 |
Number of Residues | 1 |
Details | binding site for residue K A 330 |
Chain | Residue |
A | GOL335 |
site_id | AE6 |
Number of Residues | 1 |
Details | binding site for residue K A 331 |
Chain | Residue |
A | GOL336 |
site_id | AE7 |
Number of Residues | 4 |
Details | binding site for residue K A 332 |
Chain | Residue |
A | C185 |
A | G210 |
A | U211 |
A | MG318 |
site_id | AE8 |
Number of Residues | 4 |
Details | binding site for residue GOL A 333 |
Chain | Residue |
A | C191 |
A | A205 |
A | G206 |
A | MG324 |
site_id | AE9 |
Number of Residues | 5 |
Details | binding site for residue GOL A 334 |
Chain | Residue |
A | A127 |
A | U128 |
A | C221 |
A | G222 |
A | U223 |
site_id | AF1 |
Number of Residues | 4 |
Details | binding site for residue GOL A 335 |
Chain | Residue |
A | G179 |
A | U181 |
A | K330 |
A | GOL337 |
site_id | AF2 |
Number of Residues | 3 |
Details | binding site for residue GOL A 336 |
Chain | Residue |
A | C189 |
A | A205 |
A | K331 |
site_id | AF3 |
Number of Residues | 6 |
Details | binding site for residue GOL A 337 |
Chain | Residue |
A | G179 |
A | G180 |
A | A216 |
A | C217 |
A | U218 |
A | GOL335 |
site_id | AF4 |
Number of Residues | 2 |
Details | binding site for residue GOL B 201 |
Chain | Residue |
B | ASN59 |
B | GLN88 |
site_id | AF5 |
Number of Residues | 3 |
Details | binding site for residue MG C 302 |
Chain | Residue |
C | GLN70 |
C | ARG236 |
C | GLU239 |
site_id | AF6 |
Number of Residues | 1 |
Details | binding site for residue MG C 303 |
Chain | Residue |
A | U167 |
site_id | AF7 |
Number of Residues | 2 |
Details | binding site for residue MG E 301 |
Chain | Residue |
E | U132 |
E | G164 |
site_id | AF8 |
Number of Residues | 1 |
Details | binding site for residue MG E 302 |
Chain | Residue |
E | G235 |
site_id | AF9 |
Number of Residues | 1 |
Details | binding site for residue MG E 303 |
Chain | Residue |
E | U211 |
site_id | AG1 |
Number of Residues | 1 |
Details | binding site for residue MG E 304 |
Chain | Residue |
E | G146 |
site_id | AG2 |
Number of Residues | 2 |
Details | binding site for residue MG E 305 |
Chain | Residue |
E | G135 |
E | G136 |
site_id | AG3 |
Number of Residues | 3 |
Details | binding site for residue MG E 307 |
Chain | Residue |
E | C185 |
E | A208 |
E | G209 |
site_id | AG4 |
Number of Residues | 1 |
Details | binding site for residue MG E 308 |
Chain | Residue |
E | G206 |
site_id | AG5 |
Number of Residues | 2 |
Details | binding site for residue MG E 309 |
Chain | Residue |
E | G238 |
E | G239 |
site_id | AG6 |
Number of Residues | 2 |
Details | binding site for residue MG E 310 |
Chain | Residue |
E | U236 |
E | G237 |
site_id | AG7 |
Number of Residues | 1 |
Details | binding site for residue MG E 311 |
Chain | Residue |
E | G198 |
site_id | AG8 |
Number of Residues | 1 |
Details | binding site for residue MG E 312 |
Chain | Residue |
E | G198 |
site_id | AG9 |
Number of Residues | 4 |
Details | binding site for residue K E 315 |
Chain | Residue |
E | G194 |
E | U195 |
E | G204 |
E | GOL321 |
site_id | AH1 |
Number of Residues | 2 |
Details | binding site for residue K E 316 |
Chain | Residue |
E | U181 |
E | GOL320 |
site_id | AH2 |
Number of Residues | 1 |
Details | binding site for residue K E 317 |
Chain | Residue |
E | U223 |
site_id | AH3 |
Number of Residues | 3 |
Details | binding site for residue K E 318 |
Chain | Residue |
E | C217 |
E | U218 |
E | GOL322 |
site_id | AH4 |
Number of Residues | 4 |
Details | binding site for residue K E 319 |
Chain | Residue |
E | G109 |
E | U110 |
E | U241 |
E | G243 |
site_id | AH5 |
Number of Residues | 5 |
Details | binding site for residue GOL E 320 |
Chain | Residue |
E | G179 |
E | G180 |
E | U181 |
E | K316 |
E | GOL322 |
site_id | AH6 |
Number of Residues | 5 |
Details | binding site for residue GOL E 321 |
Chain | Residue |
E | A192 |
E | G193 |
E | G203 |
E | G204 |
E | K315 |
site_id | AH7 |
Number of Residues | 4 |
Details | binding site for residue GOL E 322 |
Chain | Residue |
E | G178 |
E | G179 |
E | K318 |
E | GOL320 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | MOD_RES: Phosphothreonine => ECO:0007744|PubMed:18691976, ECO:0007744|PubMed:23186163 |
Chain | Residue | Details |
D | THR571 | |
H | THR571 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | MOD_RES: Phosphothreonine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:24275569 |
Chain | Residue | Details |
D | THR618 | |
H | THR618 |
site_id | SWS_FT_FI3 |
Number of Residues | 4 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:24275569 |
Chain | Residue | Details |
D | SER630 | |
D | SER635 | |
H | SER630 | |
H | SER635 |