5M70

Crystal Structure of human RhoGAP mutated in its arginin finger (R85A) in complex with RhoA.GDP.AlF4- human

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0007165	biological_process	signal transduction
B	0000166	molecular_function	nucleotide binding
B	0000281	biological_process	mitotic cytokinesis
B	0002363	biological_process	alpha-beta T cell lineage commitment
B	0003189	biological_process	aortic valve formation
B	0003924	molecular_function	GTPase activity
B	0003925	molecular_function	G protein activity
B	0005515	molecular_function	protein binding
B	0005525	molecular_function	GTP binding
B	0005634	cellular_component	nucleus
B	0005737	cellular_component	cytoplasm
B	0005768	cellular_component	endosome
B	0005789	cellular_component	endoplasmic reticulum membrane
B	0005829	cellular_component	cytosol
B	0005856	cellular_component	cytoskeleton
B	0005886	cellular_component	plasma membrane
B	0005925	cellular_component	focal adhesion
B	0005938	cellular_component	cell cortex
B	0007264	biological_process	small GTPase-mediated signal transduction
B	0007266	biological_process	Rho protein signal transduction
B	0009898	cellular_component	cytoplasmic side of plasma membrane
B	0010812	biological_process	negative regulation of cell-substrate adhesion
B	0016477	biological_process	cell migration
B	0016787	molecular_function	hydrolase activity
B	0017022	molecular_function	myosin binding
B	0019901	molecular_function	protein kinase binding
B	0021762	biological_process	substantia nigra development
B	0030027	cellular_component	lamellipodium
B	0030036	biological_process	actin cytoskeleton organization
B	0030054	cellular_component	cell junction
B	0030334	biological_process	regulation of cell migration
B	0030335	biological_process	positive regulation of cell migration
B	0030425	cellular_component	dendrite
B	0030496	cellular_component	midbody
B	0030667	cellular_component	secretory granule membrane
B	0031122	biological_process	cytoplasmic microtubule organization
B	0031982	cellular_component	vesicle
B	0032154	cellular_component	cleavage furrow
B	0032467	biological_process	positive regulation of cytokinesis
B	0032587	cellular_component	ruffle membrane
B	0032956	biological_process	regulation of actin cytoskeleton organization
B	0033688	biological_process	regulation of osteoblast proliferation
B	0034329	biological_process	cell junction assembly
B	0034446	biological_process	substrate adhesion-dependent cell spreading
B	0035385	biological_process	Roundabout signaling pathway
B	0036089	biological_process	cleavage furrow formation
B	0038027	biological_process	apolipoprotein A-I-mediated signaling pathway
B	0042476	biological_process	odontogenesis
B	0043123	biological_process	positive regulation of canonical NF-kappaB signal transduction
B	0043149	biological_process	stress fiber assembly
B	0043197	cellular_component	dendritic spine
B	0043296	cellular_component	apical junction complex
B	0043297	biological_process	apical junction assembly
B	0043366	biological_process	beta selection
B	0043542	biological_process	endothelial cell migration
B	0043931	biological_process	ossification involved in bone maturation
B	0044319	biological_process	wound healing, spreading of cells
B	0045198	biological_process	establishment of epithelial cell apical/basal polarity
B	0045666	biological_process	positive regulation of neuron differentiation
B	0045792	biological_process	negative regulation of cell size
B	0046638	biological_process	positive regulation of alpha-beta T cell differentiation
B	0050919	biological_process	negative chemotaxis
B	0051301	biological_process	cell division
B	0051496	biological_process	positive regulation of stress fiber assembly
B	0051893	biological_process	regulation of focal adhesion assembly
B	0060071	biological_process	Wnt signaling pathway, planar cell polarity pathway
B	0060193	biological_process	positive regulation of lipase activity
B	0061430	biological_process	bone trabecula morphogenesis
B	0070062	cellular_component	extracellular exosome
B	0070507	biological_process	regulation of microtubule cytoskeleton organization
B	0071222	biological_process	cellular response to lipopolysaccharide
B	0071345	biological_process	cellular response to cytokine stimulus
B	0071526	biological_process	semaphorin-plexin signaling pathway
B	0071902	biological_process	positive regulation of protein serine/threonine kinase activity
B	0071944	cellular_component	cell periphery
B	0090051	biological_process	negative regulation of cell migration involved in sprouting angiogenesis
B	0090307	biological_process	mitotic spindle assembly
B	0090324	biological_process	negative regulation of oxidative phosphorylation
B	0097498	biological_process	endothelial tube lumen extension
B	0098794	cellular_component	postsynapse
B	0098978	cellular_component	glutamatergic synapse
B	0099159	biological_process	regulation of modification of postsynaptic structure
B	0101003	cellular_component	ficolin-1-rich granule membrane
B	1901224	biological_process	positive regulation of non-canonical NF-kappaB signal transduction
B	1902766	biological_process	skeletal muscle satellite cell migration
B	1903427	biological_process	negative regulation of reactive oxygen species biosynthetic process
B	1903673	biological_process	mitotic cleavage furrow formation
B	1904996	biological_process	positive regulation of leukocyte adhesion to vascular endothelial cell
B	1905274	biological_process	regulation of modification of postsynaptic actin cytoskeleton
B	1990869	biological_process	cellular response to chemokine
B	2000406	biological_process	positive regulation of T cell migration
F	0007165	biological_process	signal transduction
G	0000166	molecular_function	nucleotide binding
G	0000281	biological_process	mitotic cytokinesis
G	0002363	biological_process	alpha-beta T cell lineage commitment
G	0003189	biological_process	aortic valve formation
G	0003924	molecular_function	GTPase activity
G	0003925	molecular_function	G protein activity
G	0005515	molecular_function	protein binding
G	0005525	molecular_function	GTP binding
G	0005634	cellular_component	nucleus
G	0005737	cellular_component	cytoplasm
G	0005768	cellular_component	endosome
G	0005789	cellular_component	endoplasmic reticulum membrane
G	0005829	cellular_component	cytosol
G	0005856	cellular_component	cytoskeleton
G	0005886	cellular_component	plasma membrane
G	0005925	cellular_component	focal adhesion
G	0005938	cellular_component	cell cortex
G	0007264	biological_process	small GTPase-mediated signal transduction
G	0007266	biological_process	Rho protein signal transduction
G	0009898	cellular_component	cytoplasmic side of plasma membrane
G	0010812	biological_process	negative regulation of cell-substrate adhesion
G	0016477	biological_process	cell migration
G	0016787	molecular_function	hydrolase activity
G	0017022	molecular_function	myosin binding
G	0019901	molecular_function	protein kinase binding
G	0021762	biological_process	substantia nigra development
G	0030027	cellular_component	lamellipodium
G	0030036	biological_process	actin cytoskeleton organization
G	0030054	cellular_component	cell junction
G	0030334	biological_process	regulation of cell migration
G	0030335	biological_process	positive regulation of cell migration
G	0030425	cellular_component	dendrite
G	0030496	cellular_component	midbody
G	0030667	cellular_component	secretory granule membrane
G	0031122	biological_process	cytoplasmic microtubule organization
G	0031982	cellular_component	vesicle
G	0032154	cellular_component	cleavage furrow
G	0032467	biological_process	positive regulation of cytokinesis
G	0032587	cellular_component	ruffle membrane
G	0032956	biological_process	regulation of actin cytoskeleton organization
G	0033688	biological_process	regulation of osteoblast proliferation
G	0034329	biological_process	cell junction assembly
G	0034446	biological_process	substrate adhesion-dependent cell spreading
G	0035385	biological_process	Roundabout signaling pathway
G	0036089	biological_process	cleavage furrow formation
G	0038027	biological_process	apolipoprotein A-I-mediated signaling pathway
G	0042476	biological_process	odontogenesis
G	0043123	biological_process	positive regulation of canonical NF-kappaB signal transduction
G	0043149	biological_process	stress fiber assembly
G	0043197	cellular_component	dendritic spine
G	0043296	cellular_component	apical junction complex
G	0043297	biological_process	apical junction assembly
G	0043366	biological_process	beta selection
G	0043542	biological_process	endothelial cell migration
G	0043931	biological_process	ossification involved in bone maturation
G	0044319	biological_process	wound healing, spreading of cells
G	0045198	biological_process	establishment of epithelial cell apical/basal polarity
G	0045666	biological_process	positive regulation of neuron differentiation
G	0045792	biological_process	negative regulation of cell size
G	0046638	biological_process	positive regulation of alpha-beta T cell differentiation
G	0050919	biological_process	negative chemotaxis
G	0051301	biological_process	cell division
G	0051496	biological_process	positive regulation of stress fiber assembly
G	0051893	biological_process	regulation of focal adhesion assembly
G	0060071	biological_process	Wnt signaling pathway, planar cell polarity pathway
G	0060193	biological_process	positive regulation of lipase activity
G	0061430	biological_process	bone trabecula morphogenesis
G	0070062	cellular_component	extracellular exosome
G	0070507	biological_process	regulation of microtubule cytoskeleton organization
G	0071222	biological_process	cellular response to lipopolysaccharide
G	0071345	biological_process	cellular response to cytokine stimulus
G	0071526	biological_process	semaphorin-plexin signaling pathway
G	0071902	biological_process	positive regulation of protein serine/threonine kinase activity
G	0071944	cellular_component	cell periphery
G	0090051	biological_process	negative regulation of cell migration involved in sprouting angiogenesis
G	0090307	biological_process	mitotic spindle assembly
G	0090324	biological_process	negative regulation of oxidative phosphorylation
G	0097498	biological_process	endothelial tube lumen extension
G	0098794	cellular_component	postsynapse
G	0098978	cellular_component	glutamatergic synapse
G	0099159	biological_process	regulation of modification of postsynaptic structure
G	0101003	cellular_component	ficolin-1-rich granule membrane
G	1901224	biological_process	positive regulation of non-canonical NF-kappaB signal transduction
G	1902766	biological_process	skeletal muscle satellite cell migration
G	1903427	biological_process	negative regulation of reactive oxygen species biosynthetic process
G	1903673	biological_process	mitotic cleavage furrow formation
G	1904996	biological_process	positive regulation of leukocyte adhesion to vascular endothelial cell
G	1905274	biological_process	regulation of modification of postsynaptic actin cytoskeleton
G	1990869	biological_process	cellular response to chemokine
G	2000406	biological_process	positive regulation of T cell migration

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	binding site for residue MG B 201

Chain	Residue
B	THR19
B	THR37
B	GDP202
B	ALF203
B	HOH309
B	HOH317

---

site_id	AC2
Number of Residues	20
Details	binding site for residue GDP B 202

Chain	Residue
B	LYS18
B	THR19
B	CYS20
B	PHE30
B	TYR34
B	LYS118
B	ASP120
B	LEU121
B	SER160
B	ALA161
B	LYS162
B	MG201
B	ALF203
B	HOH306
B	HOH309
B	HOH317
B	HOH319
B	ALA15
B	CYS16
B	GLY17

---

site_id	AC3
Number of Residues	15
Details	binding site for residue ALF B 203

Chain	Residue
B	GLY14
B	ALA15
B	LYS18
B	TYR34
B	PRO36
B	THR37
B	THR60
B	ALA61
B	GLY62
B	GLN63
B	MG201
B	GDP202
B	HOH303
B	HOH309
B	HOH317

---

site_id	AC4
Number of Residues	6
Details	binding site for residue MG G 201

Chain	Residue
G	THR19
G	THR37
G	GDP202
G	ALF203
G	HOH305
G	HOH306

---

site_id	AC5
Number of Residues	20
Details	binding site for residue GDP G 202

Chain	Residue
G	ALA15
G	CYS16
G	GLY17
G	LYS18
G	THR19
G	CYS20
G	PHE30
G	TYR34
G	LYS118
G	ASP120
G	LEU121
G	SER160
G	ALA161
G	LYS162
G	MG201
G	ALF203
G	HOH305
G	HOH306
G	HOH311
G	HOH317

---

site_id	AC6
Number of Residues	14
Details	binding site for residue ALF G 203

Chain	Residue
G	GLY14
G	ALA15
G	LYS18
G	TYR34
G	PRO36
G	THR37
G	THR60
G	ALA61
G	GLY62
G	GLN63
G	MG201
G	GDP202
G	HOH303
G	HOH305

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	Site: {"description":"Arginine finger; crucial for GTP hydrolysis by stabilizing the transition state","evidences":[{"source":"PROSITE-ProRule","id":"PRU00172","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	34
Details	Region: {"description":"Switch II region; involved in RAP1GDS1 isoform 2 binding","evidences":[{"source":"PubMed","id":"30190425","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5ZHX","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	16
Details	Motif: {"description":"Effector region","evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	20
Details	Binding site: {"evidences":[{"source":"PubMed","id":"10748207","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12777804","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	26
Details	Binding site: {"evidences":[{"source":"UniProtKB","id":"P62820","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	2
Details	Modified residue: {"description":"(Microbial infection) O-AMP-tyrosine; by Haemophilus IbpA; alternate","evidences":[{"source":"PubMed","id":"19362538","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	2
Details	Modified residue: {"description":"(Microbial infection) O-AMP-threonine; by Vibrio VopS","evidences":[{"source":"PubMed","id":"19039103","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI8
Number of Residues	2
Details	Modified residue: {"description":"(Microbial infection) ADP-ribosylasparagine; by botulinum toxin","evidences":[{"source":"PubMed","id":"1328215","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI9
Number of Residues	2
Details	Modified residue: {"description":"5-glutamyl serotonin","evidences":[{"source":"UniProtKB","id":"Q9QUI0","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI10
Number of Residues	2
Details	Glycosylation: {"description":"(Microbial infection) O-linked (GlcNAc) tyrosine; by Photorhabdus PAU_02230; alternate","evidences":[{"source":"PubMed","id":"24141704","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI11
Number of Residues	2
Details	Glycosylation: {"description":"(Microbial infection) O-linked (Glc) threonine; by C.difficile toxins TcdA and TcdB; alternate","evidences":[{"source":"PubMed","id":"24905543","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"7775453","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"7777059","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI12
Number of Residues	4
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"23871831","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---