5LDB
Crystal Structure of Polyphosphate Kinase from Meiothermus ruber bound to ADP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0006797 | biological_process | polyphosphate metabolic process |
| A | 0008976 | molecular_function | polyphosphate kinase activity |
| A | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
| B | 0006797 | biological_process | polyphosphate metabolic process |
| B | 0008976 | molecular_function | polyphosphate kinase activity |
| B | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
| C | 0006797 | biological_process | polyphosphate metabolic process |
| C | 0008976 | molecular_function | polyphosphate kinase activity |
| C | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
| D | 0006797 | biological_process | polyphosphate metabolic process |
| D | 0008976 | molecular_function | polyphosphate kinase activity |
| D | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 17 |
| Details | binding site for residue ADP A 1001 |
| Chain | Residue |
| A | LYS70 |
| A | VAL130 |
| A | ARG193 |
| A | MG1003 |
| A | HOH1119 |
| A | HOH1123 |
| A | HOH1150 |
| A | HOH1162 |
| A | HOH1200 |
| A | PHE91 |
| A | GLY92 |
| A | VAL93 |
| A | PRO94 |
| A | ARG106 |
| A | ARG122 |
| A | GLU126 |
| A | ASP127 |
| site_id | AC2 |
| Number of Residues | 9 |
| Details | binding site for residue PO4 A 1002 |
| Chain | Residue |
| A | ALA67 |
| A | GLY68 |
| A | GLY69 |
| A | LYS70 |
| A | ASP71 |
| A | ARG182 |
| A | HOH1119 |
| A | HOH1121 |
| A | HOH1162 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | binding site for residue MG A 1003 |
| Chain | Residue |
| A | LYS191 |
| A | ADP1001 |
| A | HOH1123 |
| A | HOH1171 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue GOL A 1004 |
| Chain | Residue |
| A | GLY72 |
| A | ARG75 |
| A | ASN232 |
| A | ARG235 |
| A | ASN236 |
| site_id | AC5 |
| Number of Residues | 13 |
| Details | binding site for residue ADP B 1001 |
| Chain | Residue |
| B | LYS70 |
| B | PHE91 |
| B | GLY92 |
| B | VAL93 |
| B | PRO94 |
| B | ARG106 |
| B | ARG122 |
| B | GLU126 |
| B | ASP127 |
| B | VAL130 |
| B | MG1003 |
| B | HOH1167 |
| B | HOH1182 |
| site_id | AC6 |
| Number of Residues | 8 |
| Details | binding site for residue PO4 B 1002 |
| Chain | Residue |
| B | ALA67 |
| B | GLY68 |
| B | GLY69 |
| B | LYS70 |
| B | ASP71 |
| B | ARG182 |
| B | HOH1145 |
| B | HOH1190 |
| site_id | AC7 |
| Number of Residues | 1 |
| Details | binding site for residue MG B 1003 |
| Chain | Residue |
| B | ADP1001 |
| site_id | AC8 |
| Number of Residues | 2 |
| Details | binding site for residue CL B 1004 |
| Chain | Residue |
| B | LYS29 |
| B | TRP233 |
| site_id | AC9 |
| Number of Residues | 12 |
| Details | binding site for residue ADP C 1001 |
| Chain | Residue |
| C | LYS70 |
| C | PHE91 |
| C | GLY92 |
| C | VAL93 |
| C | PRO94 |
| C | ARG106 |
| C | ARG122 |
| C | GLU126 |
| C | ASP127 |
| C | VAL130 |
| C | ARG193 |
| C | HOH1159 |
| site_id | AD1 |
| Number of Residues | 8 |
| Details | binding site for residue PO4 C 1002 |
| Chain | Residue |
| C | ALA67 |
| C | GLY68 |
| C | GLY69 |
| C | LYS70 |
| C | ASP71 |
| C | ARG182 |
| C | HOH1127 |
| C | HOH1159 |
| site_id | AD2 |
| Number of Residues | 15 |
| Details | binding site for residue ADP D 1001 |
| Chain | Residue |
| D | LYS70 |
| D | PHE91 |
| D | GLY92 |
| D | VAL93 |
| D | PRO94 |
| D | ARG106 |
| D | ARG122 |
| D | GLU126 |
| D | ASP127 |
| D | VAL130 |
| D | ARG193 |
| D | MG1003 |
| D | HOH1111 |
| D | HOH1151 |
| D | HOH1153 |
| site_id | AD3 |
| Number of Residues | 8 |
| Details | binding site for residue PO4 D 1002 |
| Chain | Residue |
| D | ARG182 |
| D | HOH1111 |
| D | HOH1163 |
| D | ALA67 |
| D | GLY68 |
| D | GLY69 |
| D | LYS70 |
| D | ASP71 |
| site_id | AD4 |
| Number of Residues | 2 |
| Details | binding site for residue MG D 1003 |
| Chain | Residue |
| D | ASP196 |
| D | ADP1001 |
| site_id | AD5 |
| Number of Residues | 5 |
| Details | binding site for residue MG D 1004 |
| Chain | Residue |
| B | THR95 |
| B | GLN97 |
| B | HOH1236 |
| D | THR95 |
| D | GLN97 |
