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5KGN

1.95A resolution structure of independent phosphoglycerate mutase from C. elegans in complex with a macrocyclic peptide inhibitor (2d)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004619molecular_functionphosphoglycerate mutase activity
A0005737cellular_componentcytoplasm
A0005975biological_processcarbohydrate metabolic process
A0006007biological_processglucose catabolic process
A0006096biological_processglycolytic process
A0016853molecular_functionisomerase activity
A0030145molecular_functionmanganese ion binding
A0046872molecular_functionmetal ion binding
B0003824molecular_functioncatalytic activity
B0004619molecular_functionphosphoglycerate mutase activity
B0005737cellular_componentcytoplasm
B0005975biological_processcarbohydrate metabolic process
B0006007biological_processglucose catabolic process
B0006096biological_processglycolytic process
B0016853molecular_functionisomerase activity
B0030145molecular_functionmanganese ion binding
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue CL A 601
ChainResidue
AARG97
AASN336
AHOH869

site_idAC2
Number of Residues7
Detailsbinding site for residue GOL A 602
ChainResidue
AARG287
AHIS147
AARG177
AASP178
AARG210
AARG216
AARG284

site_idAC3
Number of Residues6
Detailsbinding site for residue MG A 603
ChainResidue
AILE50
ALEU51
AALA53
ATHR55
AHOH808
AHOH944

site_idAC4
Number of Residues6
Detailsbinding site for residue MN A 604
ChainResidue
AASP426
AHIS430
AHIS485
AHOH770
AHOH998
AHOH1000

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN A 605
ChainResidue
AASP37
ASER86
AASP467
AHIS468

site_idAC6
Number of Residues2
Detailsbinding site for residue CL B 601
ChainResidue
BARG97
BASN336

site_idAC7
Number of Residues7
Detailsbinding site for residue GOL B 602
ChainResidue
BHIS147
BARG177
BASP178
BARG210
BARG216
BARG284
BARG287

site_idAC8
Number of Residues6
Detailsbinding site for residue MG B 603
ChainResidue
BILE50
BLEU51
BALA53
BTHR55
BHOH735
BHOH807

site_idAC9
Number of Residues6
Detailsbinding site for residue MN B 604
ChainResidue
BASP426
BHIS430
BHIS485
BHOH711
BHOH933
BHOH952

site_idAD1
Number of Residues4
Detailsbinding site for residue ZN B 605
ChainResidue
BASP37
BSER86
BASP467
BHIS468

site_idAD2
Number of Residues13
Detailsbinding site for Di-peptide ACE C 0 and DTY C 1
ChainResidue
AGLU87
APHE365
APHE366
CASP2
CTYR3
CASP6
CTYR7
CCYS8
CTYR9
CTYR11
CNH212
CHOH104
CHOH107

site_idAD3
Number of Residues8
Detailsbinding site for Di-peptide ACE C 0 and CYS C 8
ChainResidue
CDTY1
CASP2
CASP6
CTYR7
CTYR9
CLEU10
CTYR11
CNH212

site_idAD4
Number of Residues15
Detailsbinding site for Di-peptide DTY C 1 and ASP C 2
ChainResidue
AGLU87
AARG289
APHE365
APHE366
CACE0
CTYR3
CASP6
CCYS8
CTYR9
CTYR11
CNH212
CHOH101
CHOH104
CHOH106
CHOH107

site_idAD5
Number of Residues6
Detailsbinding site for Di-peptide TYR C 11 and NH2 C 12
ChainResidue
AASN85
AGLU87
CDTY1
CCYS8
CTYR9
CLEU10

site_idAD6
Number of Residues8
Detailsbinding site for Di-peptide ACE D 0 and CYS D 8
ChainResidue
DTYR11
DNH212
DDTY1
DASP2
DASP6
DTYR7
DTYR9
DLEU10

site_idAD7
Number of Residues12
Detailsbinding site for Di-peptide ACE D 0 and DTY D 1
ChainResidue
BGLU87
BPHE365
BPHE366
DASP2
DTYR3
DASP6
DTYR7
DCYS8
DTYR9
DNH212
DHOH103
DHOH105

site_idAD8
Number of Residues14
Detailsbinding site for Di-peptide DTY D 1 and ASP D 2
ChainResidue
BGLU87
BARG289
BPHE365
BPHE366
DACE0
DTYR3
DASP6
DCYS8
DTYR9
DNH212
DHOH101
DHOH103
DHOH105
DHOH106

site_idAD9
Number of Residues7
Detailsbinding site for Di-peptide TYR D 11 and NH2 D 12
ChainResidue
BASN85
BGLU87
BHOH727
DDTY1
DCYS8
DTYR9
DLEU10

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"evidences":[{"source":"UniProtKB","id":"Q9X519","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues30
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"Q9X519","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

246333

PDB entries from 2025-12-17

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