5K78
Dbr1 in complex with 16-mer branched RNA
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000375 | biological_process | RNA splicing, via transesterification reactions |
A | 0000398 | biological_process | mRNA splicing, via spliceosome |
A | 0003723 | molecular_function | RNA binding |
A | 0005506 | molecular_function | iron ion binding |
A | 0005634 | cellular_component | nucleus |
A | 0005737 | cellular_component | cytoplasm |
A | 0006397 | biological_process | mRNA processing |
A | 0008270 | molecular_function | zinc ion binding |
A | 0008419 | molecular_function | RNA lariat debranching enzyme activity |
A | 0016787 | molecular_function | hydrolase activity |
A | 0030145 | molecular_function | manganese ion binding |
A | 0046872 | molecular_function | metal ion binding |
A | 0048471 | cellular_component | perinuclear region of cytoplasm |
B | 0000375 | biological_process | RNA splicing, via transesterification reactions |
B | 0000398 | biological_process | mRNA splicing, via spliceosome |
B | 0003723 | molecular_function | RNA binding |
B | 0005506 | molecular_function | iron ion binding |
B | 0005634 | cellular_component | nucleus |
B | 0005737 | cellular_component | cytoplasm |
B | 0006397 | biological_process | mRNA processing |
B | 0008270 | molecular_function | zinc ion binding |
B | 0008419 | molecular_function | RNA lariat debranching enzyme activity |
B | 0016787 | molecular_function | hydrolase activity |
B | 0030145 | molecular_function | manganese ion binding |
B | 0046872 | molecular_function | metal ion binding |
B | 0048471 | cellular_component | perinuclear region of cytoplasm |
C | 0000375 | biological_process | RNA splicing, via transesterification reactions |
C | 0000398 | biological_process | mRNA splicing, via spliceosome |
C | 0003723 | molecular_function | RNA binding |
C | 0005506 | molecular_function | iron ion binding |
C | 0005634 | cellular_component | nucleus |
C | 0005737 | cellular_component | cytoplasm |
C | 0006397 | biological_process | mRNA processing |
C | 0008270 | molecular_function | zinc ion binding |
C | 0008419 | molecular_function | RNA lariat debranching enzyme activity |
C | 0016787 | molecular_function | hydrolase activity |
C | 0030145 | molecular_function | manganese ion binding |
C | 0046872 | molecular_function | metal ion binding |
C | 0048471 | cellular_component | perinuclear region of cytoplasm |
D | 0000375 | biological_process | RNA splicing, via transesterification reactions |
D | 0000398 | biological_process | mRNA splicing, via spliceosome |
D | 0003723 | molecular_function | RNA binding |
D | 0005506 | molecular_function | iron ion binding |
D | 0005634 | cellular_component | nucleus |
D | 0005737 | cellular_component | cytoplasm |
D | 0006397 | biological_process | mRNA processing |
D | 0008270 | molecular_function | zinc ion binding |
D | 0008419 | molecular_function | RNA lariat debranching enzyme activity |
D | 0016787 | molecular_function | hydrolase activity |
D | 0030145 | molecular_function | manganese ion binding |
D | 0046872 | molecular_function | metal ion binding |
D | 0048471 | cellular_component | perinuclear region of cytoplasm |
E | 0000375 | biological_process | RNA splicing, via transesterification reactions |
E | 0000398 | biological_process | mRNA splicing, via spliceosome |
E | 0003723 | molecular_function | RNA binding |
E | 0005506 | molecular_function | iron ion binding |
E | 0005634 | cellular_component | nucleus |
E | 0005737 | cellular_component | cytoplasm |
E | 0006397 | biological_process | mRNA processing |
E | 0008270 | molecular_function | zinc ion binding |
E | 0008419 | molecular_function | RNA lariat debranching enzyme activity |
E | 0016787 | molecular_function | hydrolase activity |
E | 0030145 | molecular_function | manganese ion binding |
E | 0046872 | molecular_function | metal ion binding |
E | 0048471 | cellular_component | perinuclear region of cytoplasm |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | binding site for residue FE2 A 401 |
Chain | Residue |
A | ASP45 |
A | ASN90 |
A | HIS180 |
A | HIS230 |
A | ZN402 |
site_id | AC2 |
Number of Residues | 5 |
Details | binding site for residue ZN A 402 |
Chain | Residue |
A | FE2401 |
A | CYS14 |
A | HIS16 |
A | ASP45 |
A | HIS232 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 403 |
Chain | Residue |
A | ARG50 |
A | ASN95 |
A | HIS99 |
A | PRO146 |
site_id | AC4 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 404 |
Chain | Residue |
A | LYS59 |
A | ILE132 |
A | LYS134 |
A | PHE155 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue FE2 B 401 |
Chain | Residue |
B | ASP45 |
B | ASN90 |
B | HIS180 |
B | HIS230 |
B | ZN402 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue ZN B 402 |
Chain | Residue |
B | CYS14 |
B | HIS16 |
B | ASP45 |
B | HIS232 |
B | FE2401 |
site_id | AC7 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 403 |
Chain | Residue |
B | ARG50 |
B | ASN95 |
B | HIS99 |
site_id | AC8 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 404 |
Chain | Residue |
B | THR307 |
B | LYS308 |
C | LYS215 |
site_id | AC9 |
Number of Residues | 2 |
Details | binding site for residue SO4 B 405 |
Chain | Residue |
B | LYS305 |
B | HIS355 |
site_id | AD1 |
Number of Residues | 6 |
Details | binding site for residue FE2 C 401 |
Chain | Residue |
C | ASP45 |
C | ASN90 |
C | HIS180 |
C | HIS230 |
C | ZN402 |
x | G510 |
site_id | AD2 |
Number of Residues | 6 |
Details | binding site for residue ZN C 402 |
Chain | Residue |
C | CYS14 |
C | HIS16 |
C | ASP45 |
C | HIS232 |
C | FE2401 |
x | G510 |
site_id | AD3 |
Number of Residues | 3 |
Details | binding site for residue SO4 C 403 |
Chain | Residue |
C | ARG50 |
C | ASN95 |
C | HIS99 |
site_id | AD4 |
Number of Residues | 2 |
Details | binding site for residue SO4 C 404 |
Chain | Residue |
C | SER172 |
C | GLN173 |
site_id | AD5 |
Number of Residues | 4 |
Details | binding site for residue SO4 C 405 |
Chain | Residue |
C | LYS18 |
C | TYR64 |
C | LYS249 |
X | A501 |
site_id | AD6 |
Number of Residues | 5 |
Details | binding site for residue SO4 C 406 |
Chain | Residue |
C | LYS320 |
C | TYR321 |
D | TYR51 |
D | TYR74 |
D | THR332 |
site_id | AD7 |
Number of Residues | 6 |
Details | binding site for residue FE2 D 401 |
Chain | Residue |
D | ASP45 |
D | ASN90 |
D | HIS180 |
D | HIS230 |
D | ZN402 |
y | G510 |
site_id | AD8 |
Number of Residues | 6 |
Details | binding site for residue ZN D 402 |
Chain | Residue |
D | CYS14 |
D | HIS16 |
D | ASP45 |
D | HIS232 |
D | FE2401 |
y | G510 |
site_id | AD9 |
Number of Residues | 5 |
Details | binding site for residue SO4 D 403 |
Chain | Residue |
D | ARG50 |
D | TYR57 |
D | ASN95 |
D | HIS99 |
D | PRO146 |
site_id | AE1 |
Number of Residues | 2 |
Details | binding site for residue SO4 D 404 |
Chain | Residue |
D | SER172 |
D | GLN173 |
site_id | AE2 |
Number of Residues | 3 |
Details | binding site for residue SO4 D 405 |
Chain | Residue |
D | ARG20 |
D | GLU21 |
D | ARG24 |
site_id | AE3 |
Number of Residues | 5 |
Details | binding site for residue FE2 E 401 |
Chain | Residue |
E | ASP45 |
E | ASN90 |
E | HIS180 |
E | HIS230 |
E | ZN402 |
site_id | AE4 |
Number of Residues | 5 |
Details | binding site for residue ZN E 402 |
Chain | Residue |
E | CYS14 |
E | HIS16 |
E | ASP45 |
E | HIS232 |
E | FE2401 |
site_id | AE5 |
Number of Residues | 4 |
Details | binding site for residue SO4 E 403 |
Chain | Residue |
E | ARG50 |
E | ASN95 |
E | HIS99 |
E | PRO146 |
site_id | AE6 |
Number of Residues | 20 |
Details | binding site for Di-nucleotide G x 510 and A X 501 |
Chain | Residue |
C | LYS18 |
C | ASP45 |
C | GLN47 |
C | TYR64 |
C | ASN90 |
C | GLY201 |
C | PHE202 |
C | ASP205 |
C | LEU209 |
C | HIS230 |
C | MET231 |
C | HIS232 |
C | LYS249 |
C | FE2401 |
C | ZN402 |
C | SO4405 |
X | A500 |
X | C502 |
x | U511 |
C | HIS16 |
site_id | AE7 |
Number of Residues | 21 |
Details | binding site for Di-nucleotide G y 510 and A Y 501 |
Chain | Residue |
D | HIS16 |
D | ASP45 |
D | GLN47 |
D | VAL60 |
D | PRO61 |
D | LYS63 |
D | TYR64 |
D | ASN90 |
D | GLY201 |
D | PHE202 |
D | ASP205 |
D | LEU209 |
D | HIS230 |
D | MET231 |
D | HIS232 |
D | LYS249 |
D | FE2401 |
D | ZN402 |
Y | A500 |
Y | C502 |
y | U511 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000269|PubMed:27930312, ECO:0000269|PubMed:28504306, ECO:0007744|PDB:5K73, ECO:0007744|PDB:5K77, ECO:0007744|PDB:5K78, ECO:0007744|PDB:5UKI |
Chain | Residue | Details |
A | CYS14 | |
E | HIS16 | |
A | HIS16 | |
B | CYS14 | |
B | HIS16 | |
C | CYS14 | |
C | HIS16 | |
D | CYS14 | |
D | HIS16 | |
E | CYS14 |
site_id | SWS_FT_FI2 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|PubMed:27930312, ECO:0000269|PubMed:28504306, ECO:0007744|PDB:4PEF, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEH, ECO:0007744|PDB:4PEI, ECO:0007744|PDB:5K73, ECO:0007744|PDB:5K77, ECO:0007744|PDB:5K78, ECO:0007744|PDB:5UKI |
Chain | Residue | Details |
A | ASP45 | |
E | HIS180 | |
A | HIS180 | |
B | ASP45 | |
B | HIS180 | |
C | ASP45 | |
C | HIS180 | |
D | ASP45 | |
D | HIS180 | |
E | ASP45 |
site_id | SWS_FT_FI3 |
Number of Residues | 15 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|Ref.6, ECO:0007744|PDB:4PEH, ECO:0007744|PDB:8DZK |
Chain | Residue | Details |
A | LYS59 | |
D | LYS59 | |
D | LYS134 | |
D | HIS156 | |
E | LYS59 | |
E | LYS134 | |
E | HIS156 | |
A | LYS134 | |
A | HIS156 | |
B | LYS59 | |
B | LYS134 | |
B | HIS156 | |
C | LYS59 | |
C | LYS134 | |
C | HIS156 |
site_id | SWS_FT_FI4 |
Number of Residues | 5 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|Ref.6, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEI, ECO:0007744|PDB:8DZK |
Chain | Residue | Details |
A | ASN90 | |
B | ASN90 | |
C | ASN90 | |
D | ASN90 | |
E | ASN90 |
site_id | SWS_FT_FI5 |
Number of Residues | 5 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEI |
Chain | Residue | Details |
A | ALA91 | |
B | ALA91 | |
C | ALA91 | |
D | ALA91 | |
E | ALA91 |
site_id | SWS_FT_FI6 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|PubMed:27930312, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEI, ECO:0007744|PDB:5K77, ECO:0007744|PDB:5K78 |
Chain | Residue | Details |
A | GLY201 | |
E | HIS232 | |
A | HIS232 | |
B | GLY201 | |
B | HIS232 | |
C | GLY201 | |
C | HIS232 | |
D | GLY201 | |
D | HIS232 | |
E | GLY201 |
site_id | SWS_FT_FI7 |
Number of Residues | 5 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|PubMed:27930312, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEH, ECO:0007744|PDB:4PEI, ECO:0007744|PDB:5K77, ECO:0007744|PDB:5K78 |
Chain | Residue | Details |
A | ASP205 | |
B | ASP205 | |
C | ASP205 | |
D | ASP205 | |
E | ASP205 |
site_id | SWS_FT_FI8 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000269|PubMed:27930312, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEI |
Chain | Residue | Details |
A | HIS230 | |
E | MET231 | |
A | MET231 | |
B | HIS230 | |
B | MET231 | |
C | HIS230 | |
C | MET231 | |
D | HIS230 | |
D | MET231 | |
E | HIS230 |