5K77
Dbr1 in complex with 7-mer branched RNA
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000375 | biological_process | RNA splicing, via transesterification reactions |
A | 0000398 | biological_process | mRNA splicing, via spliceosome |
A | 0003723 | molecular_function | RNA binding |
A | 0005506 | molecular_function | iron ion binding |
A | 0005634 | cellular_component | nucleus |
A | 0005737 | cellular_component | cytoplasm |
A | 0006397 | biological_process | mRNA processing |
A | 0008270 | molecular_function | zinc ion binding |
A | 0008419 | molecular_function | RNA lariat debranching enzyme activity |
A | 0016787 | molecular_function | hydrolase activity |
A | 0030145 | molecular_function | manganese ion binding |
A | 0046872 | molecular_function | metal ion binding |
A | 0048471 | cellular_component | perinuclear region of cytoplasm |
B | 0000375 | biological_process | RNA splicing, via transesterification reactions |
B | 0000398 | biological_process | mRNA splicing, via spliceosome |
B | 0003723 | molecular_function | RNA binding |
B | 0005506 | molecular_function | iron ion binding |
B | 0005634 | cellular_component | nucleus |
B | 0005737 | cellular_component | cytoplasm |
B | 0006397 | biological_process | mRNA processing |
B | 0008270 | molecular_function | zinc ion binding |
B | 0008419 | molecular_function | RNA lariat debranching enzyme activity |
B | 0016787 | molecular_function | hydrolase activity |
B | 0030145 | molecular_function | manganese ion binding |
B | 0046872 | molecular_function | metal ion binding |
B | 0048471 | cellular_component | perinuclear region of cytoplasm |
C | 0000375 | biological_process | RNA splicing, via transesterification reactions |
C | 0000398 | biological_process | mRNA splicing, via spliceosome |
C | 0003723 | molecular_function | RNA binding |
C | 0005506 | molecular_function | iron ion binding |
C | 0005634 | cellular_component | nucleus |
C | 0005737 | cellular_component | cytoplasm |
C | 0006397 | biological_process | mRNA processing |
C | 0008270 | molecular_function | zinc ion binding |
C | 0008419 | molecular_function | RNA lariat debranching enzyme activity |
C | 0016787 | molecular_function | hydrolase activity |
C | 0030145 | molecular_function | manganese ion binding |
C | 0046872 | molecular_function | metal ion binding |
C | 0048471 | cellular_component | perinuclear region of cytoplasm |
D | 0000375 | biological_process | RNA splicing, via transesterification reactions |
D | 0000398 | biological_process | mRNA splicing, via spliceosome |
D | 0003723 | molecular_function | RNA binding |
D | 0005506 | molecular_function | iron ion binding |
D | 0005634 | cellular_component | nucleus |
D | 0005737 | cellular_component | cytoplasm |
D | 0006397 | biological_process | mRNA processing |
D | 0008270 | molecular_function | zinc ion binding |
D | 0008419 | molecular_function | RNA lariat debranching enzyme activity |
D | 0016787 | molecular_function | hydrolase activity |
D | 0030145 | molecular_function | manganese ion binding |
D | 0046872 | molecular_function | metal ion binding |
D | 0048471 | cellular_component | perinuclear region of cytoplasm |
E | 0000375 | biological_process | RNA splicing, via transesterification reactions |
E | 0000398 | biological_process | mRNA splicing, via spliceosome |
E | 0003723 | molecular_function | RNA binding |
E | 0005506 | molecular_function | iron ion binding |
E | 0005634 | cellular_component | nucleus |
E | 0005737 | cellular_component | cytoplasm |
E | 0006397 | biological_process | mRNA processing |
E | 0008270 | molecular_function | zinc ion binding |
E | 0008419 | molecular_function | RNA lariat debranching enzyme activity |
E | 0016787 | molecular_function | hydrolase activity |
E | 0030145 | molecular_function | manganese ion binding |
E | 0046872 | molecular_function | metal ion binding |
E | 0048471 | cellular_component | perinuclear region of cytoplasm |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | binding site for residue ZN A 401 |
Chain | Residue |
A | CYS14 |
A | HIS16 |
A | ASP45 |
A | HIS232 |
A | FE2402 |
A | OH408 |
v | G510 |
site_id | AC2 |
Number of Residues | 7 |
Details | binding site for residue FE2 A 402 |
Chain | Residue |
A | HIS180 |
A | HIS230 |
A | ZN401 |
A | OH408 |
v | G510 |
A | ASP45 |
A | ASN90 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 403 |
Chain | Residue |
A | ARG50 |
A | ASN95 |
A | HIS99 |
A | PRO146 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue SO4 A 404 |
Chain | Residue |
A | LYS18 |
A | TYR64 |
A | LYS249 |
A | TYR252 |
V | A501 |
site_id | AC5 |
Number of Residues | 3 |
Details | binding site for residue SO4 A 405 |
Chain | Residue |
A | LYS320 |
A | TYR321 |
B | TYR74 |
site_id | AC6 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 406 |
Chain | Residue |
A | TYR74 |
A | HOH547 |
D | LYS320 |
D | TYR321 |
site_id | AC7 |
Number of Residues | 2 |
Details | binding site for residue SO4 A 407 |
Chain | Residue |
A | LYS289 |
A | THR338 |
site_id | AC8 |
Number of Residues | 8 |
Details | binding site for residue OH A 408 |
Chain | Residue |
A | CYS14 |
A | ASP45 |
A | HIS180 |
A | HIS230 |
A | HIS232 |
A | ZN401 |
A | FE2402 |
v | G510 |
site_id | AC9 |
Number of Residues | 7 |
Details | binding site for residue FE2 B 401 |
Chain | Residue |
B | ASP45 |
B | ASN90 |
B | HIS180 |
B | HIS230 |
B | ZN402 |
B | OH407 |
w | G510 |
site_id | AD1 |
Number of Residues | 7 |
Details | binding site for residue ZN B 402 |
Chain | Residue |
B | CYS14 |
B | HIS16 |
B | ASP45 |
B | HIS232 |
B | FE2401 |
B | OH407 |
w | G510 |
site_id | AD2 |
Number of Residues | 6 |
Details | binding site for residue SO4 B 403 |
Chain | Residue |
B | ARG50 |
B | ASN95 |
B | HIS99 |
B | PRO146 |
B | HOH513 |
B | HOH559 |
site_id | AD3 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 404 |
Chain | Residue |
B | LYS18 |
B | LYS249 |
W | A501 |
site_id | AD4 |
Number of Residues | 7 |
Details | binding site for residue SO4 B 405 |
Chain | Residue |
B | GLN184 |
B | GLY185 |
B | LYS215 |
B | HOH510 |
B | HOH557 |
C | THR307 |
C | LYS308 |
site_id | AD5 |
Number of Residues | 4 |
Details | binding site for residue SO4 B 406 |
Chain | Residue |
B | THR307 |
B | LYS308 |
C | LYS215 |
C | HOH546 |
site_id | AD6 |
Number of Residues | 8 |
Details | binding site for residue OH B 407 |
Chain | Residue |
B | CYS14 |
B | ASP45 |
B | HIS180 |
B | HIS230 |
B | HIS232 |
B | FE2401 |
B | ZN402 |
w | G510 |
site_id | AD7 |
Number of Residues | 7 |
Details | binding site for residue ZN C 401 |
Chain | Residue |
C | CYS14 |
C | HIS16 |
C | ASP45 |
C | HIS232 |
C | FE2402 |
C | OH410 |
x | G510 |
site_id | AD8 |
Number of Residues | 7 |
Details | binding site for residue FE2 C 402 |
Chain | Residue |
C | ASP45 |
C | ASN90 |
C | HIS180 |
C | HIS230 |
C | ZN401 |
C | OH410 |
x | G510 |
site_id | AD9 |
Number of Residues | 7 |
Details | binding site for residue SO4 C 403 |
Chain | Residue |
C | PRO146 |
C | HOH505 |
C | HOH516 |
C | HOH574 |
C | ARG50 |
C | ASN95 |
C | HIS99 |
site_id | AE1 |
Number of Residues | 7 |
Details | binding site for residue SO4 C 404 |
Chain | Residue |
C | LYS320 |
C | TYR321 |
C | HOH503 |
C | HOH515 |
D | TYR51 |
D | TYR74 |
D | THR332 |
site_id | AE2 |
Number of Residues | 5 |
Details | binding site for residue SO4 C 405 |
Chain | Residue |
C | GLN199 |
C | CYS233 |
C | GLU234 |
C | ASN254 |
C | HOH598 |
site_id | AE3 |
Number of Residues | 3 |
Details | binding site for residue SO4 C 406 |
Chain | Residue |
C | LYS18 |
C | LYS249 |
X | A501 |
site_id | AE4 |
Number of Residues | 4 |
Details | binding site for residue SO4 C 407 |
Chain | Residue |
C | LYS189 |
C | GLU238 |
C | GLU239 |
C | GLY240 |
site_id | AE5 |
Number of Residues | 2 |
Details | binding site for residue SO4 C 408 |
Chain | Residue |
C | ARG20 |
C | ARG24 |
site_id | AE6 |
Number of Residues | 4 |
Details | binding site for residue SO4 C 409 |
Chain | Residue |
C | TYR74 |
C | HOH577 |
E | LYS320 |
E | TYR321 |
site_id | AE7 |
Number of Residues | 8 |
Details | binding site for residue OH C 410 |
Chain | Residue |
C | CYS14 |
C | ASP45 |
C | HIS180 |
C | HIS230 |
C | HIS232 |
C | ZN401 |
C | FE2402 |
x | G510 |
site_id | AE8 |
Number of Residues | 7 |
Details | binding site for residue FE2 D 401 |
Chain | Residue |
D | ASP45 |
D | ASN90 |
D | HIS180 |
D | HIS230 |
D | ZN402 |
D | OH408 |
y | G510 |
site_id | AE9 |
Number of Residues | 7 |
Details | binding site for residue ZN D 402 |
Chain | Residue |
D | CYS14 |
D | HIS16 |
D | ASP45 |
D | HIS232 |
D | FE2401 |
D | OH408 |
y | G510 |
site_id | AF1 |
Number of Residues | 7 |
Details | binding site for residue SO4 D 403 |
Chain | Residue |
D | ARG50 |
D | ASN95 |
D | HIS99 |
D | PRO146 |
D | HOH517 |
D | HOH533 |
D | HOH550 |
site_id | AF2 |
Number of Residues | 2 |
Details | binding site for residue SO4 D 404 |
Chain | Residue |
D | SER172 |
D | GLN173 |
site_id | AF3 |
Number of Residues | 5 |
Details | binding site for residue SO4 D 405 |
Chain | Residue |
D | GLN163 |
D | SER298 |
D | ILE299 |
D | SER300 |
D | HOH590 |
site_id | AF4 |
Number of Residues | 4 |
Details | binding site for residue SO4 D 406 |
Chain | Residue |
D | GLY68 |
D | HIS71 |
D | LEU72 |
D | HOH599 |
site_id | AF5 |
Number of Residues | 5 |
Details | binding site for residue SO4 D 407 |
Chain | Residue |
D | LYS18 |
D | TYR64 |
D | LYS249 |
D | TYR252 |
Y | A501 |
site_id | AF6 |
Number of Residues | 8 |
Details | binding site for residue OH D 408 |
Chain | Residue |
D | CYS14 |
D | ASP45 |
D | HIS180 |
D | HIS230 |
D | HIS232 |
D | FE2401 |
D | ZN402 |
y | G510 |
site_id | AF7 |
Number of Residues | 7 |
Details | binding site for residue FE2 E 401 |
Chain | Residue |
E | ASP45 |
E | ASN90 |
E | HIS180 |
E | HIS230 |
E | ZN402 |
E | OH407 |
z | G510 |
site_id | AF8 |
Number of Residues | 7 |
Details | binding site for residue ZN E 402 |
Chain | Residue |
E | CYS14 |
E | HIS16 |
E | ASP45 |
E | HIS232 |
E | FE2401 |
E | OH407 |
z | G510 |
site_id | AF9 |
Number of Residues | 7 |
Details | binding site for residue SO4 E 403 |
Chain | Residue |
E | ARG50 |
E | ASN95 |
E | HIS99 |
E | PRO146 |
E | HOH509 |
E | HOH529 |
E | HOH545 |
site_id | AG1 |
Number of Residues | 5 |
Details | binding site for residue SO4 E 404 |
Chain | Residue |
E | LYS18 |
E | TYR64 |
E | LYS249 |
E | TYR252 |
Z | A501 |
site_id | AG2 |
Number of Residues | 4 |
Details | binding site for residue SO4 E 405 |
Chain | Residue |
E | GLN163 |
E | SER298 |
E | ILE299 |
E | SER300 |
site_id | AG3 |
Number of Residues | 5 |
Details | binding site for residue SO4 E 406 |
Chain | Residue |
B | LYS320 |
B | TYR321 |
E | TYR51 |
E | TYR74 |
E | HOH570 |
site_id | AG4 |
Number of Residues | 8 |
Details | binding site for residue OH E 407 |
Chain | Residue |
E | CYS14 |
E | ASP45 |
E | HIS180 |
E | HIS230 |
E | HIS232 |
E | FE2401 |
E | ZN402 |
z | G510 |
site_id | AG5 |
Number of Residues | 25 |
Details | binding site for Di-nucleotide G G 510 and A V 501 |
Chain | Residue |
A | HIS16 |
A | ASP45 |
A | GLN47 |
A | VAL60 |
A | PRO61 |
A | TYR64 |
A | ASN90 |
A | GLY201 |
A | PHE202 |
A | ASP205 |
A | LEU209 |
A | HIS230 |
A | MET231 |
A | HIS232 |
A | LYS249 |
A | ZN401 |
A | FE2402 |
A | SO4404 |
A | OH408 |
A | HOH529 |
A | HOH534 |
v | U511 |
v | HOH601 |
V | A500 |
V | C502 |
site_id | AG6 |
Number of Residues | 22 |
Details | binding site for Di-nucleotide G H 510 and A W 501 |
Chain | Residue |
B | HIS16 |
B | ASP45 |
B | GLN47 |
B | PRO61 |
B | LYS63 |
B | TYR64 |
B | ASN90 |
B | GLY201 |
B | ASP205 |
B | LEU209 |
B | HIS230 |
B | MET231 |
B | HIS232 |
B | LYS249 |
B | FE2401 |
B | ZN402 |
B | SO4404 |
B | OH407 |
B | HOH549 |
w | U511 |
W | A500 |
W | C502 |
site_id | AG7 |
Number of Residues | 25 |
Details | binding site for Di-nucleotide G I 510 and A X 501 |
Chain | Residue |
C | HIS16 |
C | ASP45 |
C | GLN47 |
C | VAL60 |
C | PRO61 |
C | TYR64 |
C | ASN90 |
C | GLY201 |
C | PHE202 |
C | ASP205 |
C | LEU209 |
C | HIS230 |
C | MET231 |
C | HIS232 |
C | LYS249 |
C | ZN401 |
C | FE2402 |
C | SO4406 |
C | OH410 |
C | HOH532 |
C | HOH592 |
x | U511 |
x | HOH601 |
X | A500 |
X | C502 |
site_id | AG8 |
Number of Residues | 23 |
Details | binding site for Di-nucleotide G J 510 and A Y 501 |
Chain | Residue |
D | HIS16 |
D | ASP45 |
D | GLN47 |
D | VAL60 |
D | PRO61 |
D | TYR64 |
D | ASN90 |
D | GLY201 |
D | PHE202 |
D | ASP205 |
D | LEU209 |
D | HIS230 |
D | MET231 |
D | HIS232 |
D | LYS249 |
D | FE2401 |
D | ZN402 |
D | SO4407 |
D | OH408 |
D | HOH523 |
y | U511 |
Y | A500 |
Y | C502 |
site_id | AG9 |
Number of Residues | 23 |
Details | binding site for Di-nucleotide G K 510 and A Z 501 |
Chain | Residue |
E | HIS16 |
E | ASP45 |
E | GLN47 |
E | VAL60 |
E | PRO61 |
E | TYR64 |
E | ASN90 |
E | GLY201 |
E | PHE202 |
E | ASP205 |
E | LEU209 |
E | HIS230 |
E | MET231 |
E | HIS232 |
E | LYS249 |
E | FE2401 |
E | ZN402 |
E | SO4404 |
E | OH407 |
z | U511 |
Z | A500 |
Z | C502 |
Z | HOH602 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000269|PubMed:27930312, ECO:0000269|PubMed:28504306, ECO:0007744|PDB:5K73, ECO:0007744|PDB:5K77, ECO:0007744|PDB:5K78, ECO:0007744|PDB:5UKI |
Chain | Residue | Details |
A | CYS14 | |
E | HIS16 | |
A | HIS16 | |
B | CYS14 | |
B | HIS16 | |
C | CYS14 | |
C | HIS16 | |
D | CYS14 | |
D | HIS16 | |
E | CYS14 |
site_id | SWS_FT_FI2 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|PubMed:27930312, ECO:0000269|PubMed:28504306, ECO:0007744|PDB:4PEF, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEH, ECO:0007744|PDB:4PEI, ECO:0007744|PDB:5K73, ECO:0007744|PDB:5K77, ECO:0007744|PDB:5K78, ECO:0007744|PDB:5UKI |
Chain | Residue | Details |
A | ASP45 | |
E | HIS180 | |
A | HIS180 | |
B | ASP45 | |
B | HIS180 | |
C | ASP45 | |
C | HIS180 | |
D | ASP45 | |
D | HIS180 | |
E | ASP45 |
site_id | SWS_FT_FI3 |
Number of Residues | 15 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|Ref.6, ECO:0007744|PDB:4PEH, ECO:0007744|PDB:8DZK |
Chain | Residue | Details |
A | LYS59 | |
D | LYS59 | |
D | LYS134 | |
D | HIS156 | |
E | LYS59 | |
E | LYS134 | |
E | HIS156 | |
A | LYS134 | |
A | HIS156 | |
B | LYS59 | |
B | LYS134 | |
B | HIS156 | |
C | LYS59 | |
C | LYS134 | |
C | HIS156 |
site_id | SWS_FT_FI4 |
Number of Residues | 5 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|Ref.6, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEI, ECO:0007744|PDB:8DZK |
Chain | Residue | Details |
A | ASN90 | |
B | ASN90 | |
C | ASN90 | |
D | ASN90 | |
E | ASN90 |
site_id | SWS_FT_FI5 |
Number of Residues | 5 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEI |
Chain | Residue | Details |
A | ALA91 | |
B | ALA91 | |
C | ALA91 | |
D | ALA91 | |
E | ALA91 |
site_id | SWS_FT_FI6 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|PubMed:27930312, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEI, ECO:0007744|PDB:5K77, ECO:0007744|PDB:5K78 |
Chain | Residue | Details |
A | GLY201 | |
E | HIS232 | |
A | HIS232 | |
B | GLY201 | |
B | HIS232 | |
C | GLY201 | |
C | HIS232 | |
D | GLY201 | |
D | HIS232 | |
E | GLY201 |
site_id | SWS_FT_FI7 |
Number of Residues | 5 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|PubMed:27930312, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEH, ECO:0007744|PDB:4PEI, ECO:0007744|PDB:5K77, ECO:0007744|PDB:5K78 |
Chain | Residue | Details |
A | ASP205 | |
B | ASP205 | |
C | ASP205 | |
D | ASP205 | |
E | ASP205 |
site_id | SWS_FT_FI8 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000269|PubMed:27930312, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEI |
Chain | Residue | Details |
A | HIS230 | |
E | MET231 | |
A | MET231 | |
B | HIS230 | |
B | MET231 | |
C | HIS230 | |
C | MET231 | |
D | HIS230 | |
D | MET231 | |
E | HIS230 |