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5JMP

Structure of Plasmodium falciparum DXR in complex with a beta-substituted fosmidomycin analogue, LC57 and manganese

Functional Information from GO Data
ChainGOidnamespacecontents
A0008299biological_processisoprenoid biosynthetic process
A0030604molecular_function1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
A0046872molecular_functionmetal ion binding
A0070402molecular_functionNADPH binding
B0008299biological_processisoprenoid biosynthetic process
B0030604molecular_function1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
B0046872molecular_functionmetal ion binding
B0070402molecular_functionNADPH binding
Functional Information from PDB Data
site_idAC1
Number of Residues20
Detailsbinding site for residue LC7 A 501
ChainResidue
ALYS205
ALYS312
AGLU315
AHIS341
APRO358
AASP359
AMET360
AMN502
AGOL503
AHOH604
AHOH619
AASP231
AHOH671
ASER232
AGLU233
ASER269
ASER270
ATRP296
ASER306
AASN311

site_idAC2
Number of Residues5
Detailsbinding site for residue MN A 502
ChainResidue
ALYS205
AASP231
AGLU233
AGLU315
ALC7501

site_idAC3
Number of Residues10
Detailsbinding site for residue GOL A 503
ChainResidue
ASER232
AGLU233
ACYS268
ASER269
ASER270
AHIS335
ACYS338
AILE340
AHIS341
ALC7501

site_idAC4
Number of Residues4
Detailsbinding site for residue 6LB A 504
ChainResidue
AGLN407
ALYS411
ASER445
ALEU448

site_idAC5
Number of Residues6
Detailsbinding site for residue EDO A 505
ChainResidue
ASER257
AILE262
AASN263
AASP326
AASP329
AHOH783

site_idAC6
Number of Residues4
Detailsbinding site for residue EDO A 506
ChainResidue
AGLU331
AVAL332
ATYR406
AHOH752

site_idAC7
Number of Residues7
Detailsbinding site for residue EDO A 507
ChainResidue
AASP242
AASN260
AASN261
APHE346
AHOH623
BARG373
BHOH612

site_idAC8
Number of Residues4
Detailsbinding site for residue EDO A 508
ChainResidue
ATRP296
APRO358
AHOH609
AHOH618

site_idAC9
Number of Residues4
Detailsbinding site for residue EDO A 509
ChainResidue
AGLN454
AGLN469
ATRP473
BASN452

site_idAD1
Number of Residues5
Detailsbinding site for residue EDO A 510
ChainResidue
ALYS216
ALEU252
AHIS320
APHE321
AASP324

site_idAD2
Number of Residues10
Detailsbinding site for residue EDO B 501
ChainResidue
AGLN239
ALEU241
AASP242
AHOH603
BGLN239
BLEU241
BASP242
BHOH606
BHOH612
BHOH648

site_idAD3
Number of Residues19
Detailsbinding site for residue LC7 B 502
ChainResidue
BLYS205
BASP231
BSER232
BGLU233
BSER269
BSER270
BTRP296
BSER306
BASN311
BLYS312
BGLU315
BHIS341
BPRO358
BASP359
BMET360
BMN503
BGOL504
BHOH622
BHOH693

site_idAD4
Number of Residues5
Detailsbinding site for residue MN B 503
ChainResidue
BASP231
BGLU233
BGLU315
BLC7502
BLYS205

site_idAD5
Number of Residues10
Detailsbinding site for residue GOL B 504
ChainResidue
BSER232
BGLU233
BCYS268
BSER269
BSER270
BHIS335
BCYS338
BILE340
BHIS341
BLC7502

site_idAD6
Number of Residues4
Detailsbinding site for residue 6LB B 505
ChainResidue
BGLN407
BLYS411
BSER445
BLEU448

site_idAD7
Number of Residues5
Detailsbinding site for residue EDO B 506
ChainResidue
AASN101
ALYS102
AILE103
BLYS102
BILE103

site_idAD8
Number of Residues4
Detailsbinding site for residue EDO B 507
ChainResidue
BILE262
BASN263
BASP326
BASP329

site_idAD9
Number of Residues7
Detailsbinding site for residue EDO B 508
ChainResidue
BASN197
BILE221
BHIS222
BLYS223
BASN224
BASN433
BHOH747

site_idAE1
Number of Residues5
Detailsbinding site for residue EDO B 509
ChainResidue
BTHR249
BGLN253
BASN284
BASN289
BHOH619

site_idAE2
Number of Residues5
Detailsbinding site for residue EDO B 510
ChainResidue
BLYS216
BHIS320
BPHE321
BASP324
BHOH617

site_idAE3
Number of Residues4
Detailsbinding site for residue EDO B 511
ChainResidue
BGLU331
BVAL332
BTYR406
BHOH665

site_idAE4
Number of Residues3
Detailsbinding site for residue EDO B 512
ChainResidue
BASN95
BARG98
BGLN124

site_idAE5
Number of Residues6
Detailsbinding site for residue EDO B 513
ChainResidue
AASN452
BGLN454
BGLN469
BTRP473
BHOH663
BHOH664

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:O96693
ChainResidueDetails
ATHR86
AASN115
AGLU206
AGLY299
BTHR86
BASN115
BGLU206
BGLY299

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P45568
ChainResidueDetails
ALYS205
BSER270
BHIS293
BSER306
BASN311
BLYS312
ASER232
ASER270
AHIS293
ASER306
AASN311
ALYS312
BLYS205
BSER232

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:25781377, ECO:0000269|PubMed:27487410, ECO:0007744|PDB:4Y67, ECO:0007744|PDB:4Y6P, ECO:0007744|PDB:4Y6R, ECO:0007744|PDB:4Y6S, ECO:0007744|PDB:5JAZ, ECO:0007744|PDB:5JBI, ECO:0007744|PDB:5JC1, ECO:0007744|PDB:5JMP, ECO:0007744|PDB:5JMW, ECO:0007744|PDB:5JNL, ECO:0007744|PDB:5JO0
ChainResidueDetails
AASP231
AGLU233
AGLU315
BASP231
BGLU233
BGLU315

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PDB entries from 2024-09-18

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