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5IJ9

Cryo EM density of microtubule assembled from human TUBB3-D417H mutant

Functional Information from GO Data
ChainGOidnamespacecontents
A0000226biological_processmicrotubule cytoskeleton organization
A0000278biological_processmitotic cell cycle
A0003725molecular_functiondouble-stranded RNA binding
A0003924molecular_functionGTPase activity
A0005198molecular_functionstructural molecule activity
A0005200molecular_functionstructural constituent of cytoskeleton
A0005515molecular_functionprotein binding
A0005525molecular_functionGTP binding
A0005737cellular_componentcytoplasm
A0005856cellular_componentcytoskeleton
A0005874cellular_componentmicrotubule
A0005881cellular_componentcytoplasmic microtubule
A0007017biological_processmicrotubule-based process
A0015630cellular_componentmicrotubule cytoskeleton
A0016787molecular_functionhydrolase activity
A0030705biological_processcytoskeleton-dependent intracellular transport
A0031625molecular_functionubiquitin protein ligase binding
A0051301biological_processcell division
A0071353biological_processcellular response to interleukin-4
B0000226biological_processmicrotubule cytoskeleton organization
B0000278biological_processmitotic cell cycle
B0003924molecular_functionGTPase activity
B0005200molecular_functionstructural constituent of cytoskeleton
B0005515molecular_functionprotein binding
B0005525molecular_functionGTP binding
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0005856cellular_componentcytoskeleton
B0005874cellular_componentmicrotubule
B0007017biological_processmicrotubule-based process
B0007411biological_processaxon guidance
B0015630cellular_componentmicrotubule cytoskeleton
B0030027cellular_componentlamellipodium
B0030175cellular_componentfilopodium
B0030182biological_processneuron differentiation
B0030424cellular_componentaxon
B0030425cellular_componentdendrite
B0030426cellular_componentgrowth cone
B0038007biological_processnetrin-activated signaling pathway
B0042277molecular_functionpeptide binding
B0042995cellular_componentcell projection
B0043025cellular_componentneuronal cell body
B0045171cellular_componentintercellular bridge
B0046872molecular_functionmetal ion binding
B0070062cellular_componentextracellular exosome
B0071944cellular_componentcell periphery
B0072686cellular_componentmitotic spindle
B1990791biological_processdorsal root ganglion development
B1990890molecular_functionnetrin receptor binding
Functional Information from PDB Data
site_idAC1
Number of Residues20
Detailsbinding site for residue GTP A 501
ChainResidue
AGLY10
AGLY144
ATHR145
AILE171
ATHR179
AGLU183
AASN206
ATYR224
AASN228
AMG502
BLEU246
AGLN11
BLYS252
AALA12
AGLN15
AASP98
AALA99
AALA100
AASN101
ASER140

site_idAC2
Number of Residues3
Detailsbinding site for residue MG A 502
ChainResidue
AASP69
AGLU71
AGTP501

site_idAC3
Number of Residues12
Detailsbinding site for residue GDP B 501
ChainResidue
BGLN11
BCYS12
BGLN15
BASN99
BSER138
BGLY141
BGLY142
BTHR143
BASP177
BASN204
BTYR222
BASN226

Functional Information from PROSITE/UniProt
site_idPS00227
Number of Residues7
DetailsTUBULIN Tubulin subunits alpha, beta, and gamma signature. GGGTGSG
ChainResidueDetails
AGLY142-GLY148
BGLY140-GLY146

site_idPS00228
Number of Residues4
DetailsTUBULIN_B_AUTOREG Tubulin-beta mRNA autoregulation signal. MREI
ChainResidueDetails
BMET1-ILE4

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000305|PubMed:34996871, ECO:0000305|PubMed:35482892, ECO:0007744|PDB:7SJ7, ECO:0007744|PDB:7Z6S
ChainResidueDetails
BGLN11
BGLY142
BTHR143
BGLY144
BASN204
BASN226

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P68363
ChainResidueDetails
BGLU69
AGLU71
ASER140
AGLY144
ATHR145
ATHR179
AASN206
AASN228

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000305|PubMed:34996871, ECO:0007744|PDB:7SJ7
ChainResidueDetails
BSER138

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: Phosphoserine; by CDK1 => ECO:0000269|PubMed:16371510
ChainResidueDetails
BSER172
ASER232

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: 3'-nitrotyrosine => ECO:0000250|UniProtKB:P68373
ChainResidueDetails
ATYR282

site_idSWS_FT_FI6
Number of Residues1
DetailsMOD_RES: Omega-N-methylarginine => ECO:0000269|Ref.6
ChainResidueDetails
AARG339

site_idSWS_FT_FI7
Number of Residues3
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)
ChainResidueDetails
ALYS326
ALYS370

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PDB entries from 2024-07-10

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