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5HGG

Crystal structure of uPA in complex with a camelid-derived antibody fragment

Functional Information from GO Data
ChainGOidnamespacecontents
A0004252molecular_functionserine-type endopeptidase activity
A0006508biological_processproteolysis
B0004252molecular_functionserine-type endopeptidase activity
B0006508biological_processproteolysis
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue GOL A 301
ChainResidue
AHIS170
ALYS223
AASP223
SGLY10
SLEU11
SGLN122
STHR124

site_idAC2
Number of Residues5
Detailsbinding site for residue GOL A 302
ChainResidue
AASP223
AHOH404
TGLN13
AHIS170
ALYS223

site_idAC3
Number of Residues5
Detailsbinding site for residue GOL B 301
ChainResidue
BHIS170
BTYR171
BASP223
BHOH424
TGOL202

site_idAC4
Number of Residues3
Detailsbinding site for residue SO4 B 302
ChainResidue
BSER125
BMET126
BARG239

site_idAC5
Number of Residues9
Detailsbinding site for residue TWN S 201
ChainResidue
BTHR147
SARG45
STYR95
STRP117
STWN202
TARG45
TTRP117
TTWN201
THOH341

site_idAC6
Number of Residues9
Detailsbinding site for residue TWN S 202
ChainResidue
ATYR149
BTYR149
SARG45
SHIS100
SLEU103
SGLU115
STRP117
STWN201
TGLU44

site_idAC7
Number of Residues5
Detailsbinding site for residue SO4 S 203
ChainResidue
SSER52
SSER54
SGLY56
SSER57
SHOH328

site_idAC8
Number of Residues7
Detailsbinding site for residue MES S 204
ChainResidue
AMET126
AARG239
AHOH403
SLEU11
SGLN13
SSER127
SHOH317

site_idAC9
Number of Residues10
Detailsbinding site for residue TWN T 201
ChainResidue
ATYR149
SGLU44
STWN201
TPHE37
TARG45
TLEU103
TGLU115
TTRP117
THOH314
THOH340

site_idAD1
Number of Residues9
Detailsbinding site for residue GOL T 202
ChainResidue
BHIS170
BLYS223
BASP223
BLYS224
BGOL301
TGLY10
TLEU11
TGLN122
TTHR124

site_idAD2
Number of Residues4
Detailsbinding site for residue GOL T 203
ChainResidue
TSER7
TGLY8
TGLY9
TTHR121

Functional Information from PROSITE/UniProt
site_idPS00134
Number of Residues6
DetailsTRYPSIN_HIS Serine proteases, trypsin family, histidine active site. ISATHC
ChainResidueDetails
AILE53-CYS58

site_idPS00135
Number of Residues12
DetailsTRYPSIN_SER Serine proteases, trypsin family, serine active site. DScqGDSGGPLV
ChainResidueDetails
AASP189-VAL200

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: Charge relay system
ChainResidueDetails
AHIS57
AASP102
ASER195
BHIS57
BASP102
BSER195

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:9151681
ChainResidueDetails
ASER146
BSER146

site_idSWS_FT_FI3
Number of Residues2
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine
ChainResidueDetails
AGLN145
BGLN145

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PDB entries from 2024-07-17

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