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5FYM

Crystal structure of JmjC domain of human histone demethylase UTY in complex with D-2-hydroxyglutarate

Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 4002
ChainResidue
ACYS1199
ACYS1202
ACYS1226
ACYS1229

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 4002
ChainResidue
BCYS1199
BCYS1202
BCYS1226
BCYS1229

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN B 2273
ChainResidue
BGLU1016
BHIS1094
B2HG2274
BHOH3137
BHIS1014

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 2266
ChainResidue
AHIS1014
AGLU1016
AHIS1094
A2HG2267
AHOH3145

site_idAC5
Number of Residues14
DetailsBINDING SITE FOR RESIDUE 2HG A 2267
ChainResidue
ALYS1005
ATHR1011
AHIS1014
AGLU1016
ASER1022
AASN1024
ATRP1034
AHIS1094
AALA1106
AMN2266
AEDO2278
AHOH3140
AHOH3145
AHOH3316

site_idAC6
Number of Residues14
DetailsBINDING SITE FOR RESIDUE 2HG B 2274
ChainResidue
BLYS1005
BTHR1011
BHIS1014
BGLU1016
BSER1022
BASN1024
BTRP1034
BHIS1094
BALA1106
BMN2273
BEDO2282
BHOH3130
BHOH3131
BHOH3137

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 2275
ChainResidue
BILE888
BTRP889
BARG890
BASN1052
BHOH3308

site_idAC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO A 2268
ChainResidue
ASER853
ATHR854
AGLN907
AGLY1028
APRO1029
AASN1103
AEDO2269
AEDO2273
AHOH3039

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 2269
ChainResidue
APRO1029
ATRP1101
AEDO2268
AEDO2275
AHOH3083

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 2270
ChainResidue
AARG1077
AHOH3004
BASN919
BGLU920

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 2271
ChainResidue
AHIS1188
AHIS1197
ATYR1222
AVAL1224

site_idBC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 2272
ChainResidue
AGLY840
AALA842
AGLY843
APRO1082
AGLY1083
AASP1084
AHOH3318

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 2276
ChainResidue
ALYS816
BVAL1044
BASP1047
BPHE1048
BALA1071
BHOH3309

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 2277
ChainResidue
BPHE911
BPRO1029
BTRP1101
BEDO2278
BHOH3085

site_idBC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 2278
ChainResidue
BSER853
BTHR854
BPRO1029
BASN1103
BEDO2277
BEDO2286
BHOH3033

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 2273
ChainResidue
AILE1027
AEDO2268
AHOH3319
AGLY850

site_idBC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 2279
ChainResidue
BLEU971
BTHR972
BARG979
BVAL980
BVAL981

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 2280
ChainResidue
BHIS864
BASP957
BASP960
BLYS963
BHOH3046

site_idCC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 2281
ChainResidue
BLYS1128
BSER1131
BCYS1202
BHOH3208

site_idCC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE EDO B 2282
ChainResidue
BGLY996
BGLN1001
BTYR1003
BGLU1016
BSER1022
BALA1106
BTRP1107
BASN1108
B2HG2274
BHOH3129

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 2274
ChainResidue
ATHR829
ACYS1021
AASN1089
APRO1111
ATHR1113
ACYS1115

site_idCC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 2275
ChainResidue
APRO1029
AGLY1030
AGLY1100
ATRP1101
AEDO2269
AHOH3320

site_idCC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 2283
ChainResidue
AARG1081
BSER914
BGLU918

site_idCC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE EDO A 2276
ChainResidue
APRO831
AGLU1039
AASN1089
AALA1090
ATHR1092
ACYS1115
ALEU1119
AHOH3160
AHOH3161
AHOH3163

site_idCC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 2284
ChainResidue
AGLU863
AHOH3046
BASN1214
BGLU1215
BTHR1218
BHOH3313

site_idCC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 2285
ChainResidue
BHIS1225
BTHR1233
BHOH3314

site_idCC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 2286
ChainResidue
BSER853
BILE1027
BGLY1028
BPRO1029
BEDO2278

site_idDC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 2287
ChainResidue
BTHR829
BCYS1021
BASN1089
BPRO1111
BTHR1113
BCYS1115
BGLN1116

site_idDC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 2288
ChainResidue
BPRO1029
BGLY1030
BGLY1100
BTRP1101
BHOH3315

site_idDC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 2277
ChainResidue
AGLN1170
AHIS1227
AASP1228
AHOH3236
AHOH3321
BTHR1259
BLEU1260

site_idDC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 2278
ChainResidue
AGLY996
AGLN1001
ATYR1003
AALA1106
ATRP1107
AASN1108
A2HG2267
AHOH3145

site_idDC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 2279
ChainResidue
AHIS825
AALA976
APHE977
ASER982
AGLY984
AHOH3322

site_idDC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 2280
ChainResidue
ALYS803
ATYR1041
AASN1072

site_idDC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 2281
ChainResidue
AILE811
APRO823
ALEU824
AHOH3021
AHOH3323

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues326
DetailsDomain: {"description":"JmjC","evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues14
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"24798337","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsModified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"24798337","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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